Variant report

Variant	rs519535
Chromosome Location	chr11:59355796-59355797
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59354189..59356140-chr11:59358099..59360988,3	K562	blood:
2	chr11:59353932..59356058-chr11:59357953..59360980,3	K562	blood:
3	chr11:59313138..59315847-chr11:59354550..59357192,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1287449	0.86[AMR][1000 genomes]
rs1530995	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17153962	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17153966	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17153982	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2298868	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2298869	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2924491	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2924493	0.82[ASN][1000 genomes]
rs35770960	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41340150	0.82[ASN][1000 genomes]
rs486952	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4939293	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs518026	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs558505	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs559150	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs563683	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs565482	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs572368	0.81[ASN][1000 genomes]
rs7939527	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7952495	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59334200-59366200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:59334200-59382000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:59340800-59378200	Strong transcription	Fetal Thymus	thymus
4	chr11:59342000-59379000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:59342200-59358000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:59342200-59378200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:59343600-59378400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:59343800-59382000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:59344000-59360400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:59346200-59360400	Weak transcription	Esophagus	oesophagus
11	chr11:59346200-59360400	Weak transcription	Right Ventricle	heart
12	chr11:59346200-59361000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:59346600-59360400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:59347600-59359800	Weak transcription	Spleen	Spleen
15	chr11:59349000-59357600	Weak transcription	HUVEC	blood vessel
16	chr11:59349000-59359400	Weak transcription	Brain Angular Gyrus	brain
17	chr11:59350000-59360400	Weak transcription	Gastric	stomach
18	chr11:59350200-59355800	Weak transcription	Aorta	Aorta
19	chr11:59350200-59360800	Weak transcription	Stomach Mucosa	stomach
20	chr11:59350200-59361000	Weak transcription	Psoas Muscle	Psoas
21	chr11:59350200-59378200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:59350400-59360600	Weak transcription	NHLF	lung
23	chr11:59351400-59371400	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr11:59351600-59357000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:59351800-59369000	Strong transcription	Placenta	Placenta
26	chr11:59352000-59359600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr11:59352000-59360400	Weak transcription	Pancreas	Pancrea
28	chr11:59352200-59357400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:59352200-59357600	Weak transcription	Fetal Brain Male	brain
30	chr11:59352200-59371200	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr11:59352400-59356400	Strong transcription	Primary B cells from peripheral blood	blood
32	chr11:59352400-59358000	Weak transcription	HSMMtube	muscle
33	chr11:59352400-59359400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr11:59352400-59359400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr11:59352400-59359400	Weak transcription	Colon Smooth Muscle	Colon
36	chr11:59352400-59360600	Weak transcription	Fetal Heart	heart
37	chr11:59352400-59369200	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr11:59352400-59378000	Strong transcription	Sigmoid Colon	Sigmoid Colon
39	chr11:59352600-59357000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr11:59352600-59357800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr11:59352600-59359400	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr11:59352600-59378200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:59352800-59378400	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr11:59353000-59358200	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr11:59353000-59368600	Strong transcription	Liver	Liver
46	chr11:59353000-59371200	Strong transcription	Left Ventricle	heart
47	chr11:59353200-59356000	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr11:59353200-59377800	Strong transcription	Fetal Muscle Trunk	muscle
49	chr11:59353200-59378200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr11:59353200-59378400	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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