Variant report

Variant	rs2298869
Chromosome Location	chr11:59324020-59324021
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr11:59323697-59325465	K562	blood:	n/a	chr11:59323975-59323996 chr11:59324101-59324111 chr11:59323981-59323995
2	TAF1	chr11:59323698-59324212	PFSK-1	brain:	n/a	n/a
3	E2F6	chr11:59323465-59325142	A549	lung:	n/a	n/a
4	ETS1	chr11:59323780-59324041	K562	blood:	n/a	n/a
5	USF1	chr11:59323654-59324121	A549	lung:	n/a	chr11:59323847-59323858
6	STAT5A	chr11:59323134-59324221	GM12878	blood:	n/a	chr11:59324007-59324019
7	ARID3A	chr11:59323778-59325256	HepG2	liver:	n/a	chr11:59324316-59324332 chr11:59324315-59324331
8	CHD2	chr11:59323726-59325142	K562	blood:	n/a	n/a
9	USF2	chr11:59323683-59324030	HepG2	liver:	n/a	chr11:59323847-59323858
10	WRNIP1	chr11:59323666-59324090	GM12878	blood:	n/a	n/a
11	GTF3C2	chr11:59323507-59325908	K562	blood:	n/a	n/a
12	USF1	chr11:59323666-59324204	A549	lung:	n/a	chr11:59323847-59323858
13	CUX1	chr11:59323289-59325115	K562	blood:	n/a	chr11:59323507-59323518
14	MAX	chr11:59323687-59324049	HepG2	liver:	n/a	chr11:59323848-59323859 chr11:59323849-59323859 chr11:59323849-59323858 chr11:59323848-59323858 chr11:59323848-59323859 chr11:59323848-59323858 chr11:59323849-59323859 chr11:59323847-59323860 chr11:59323848-59323859 chr11:59323847-59323860
15	RUNX3	chr11:59323240-59325269	GM12878	blood:	n/a	n/a
16	ETS1	chr11:59323687-59324164	K562	blood:	n/a	n/a
17	MAZ	chr11:59323606-59324197	Hela-S3	cervix:	n/a	chr11:59323848-59323859 chr11:59323849-59323859 chr11:59323849-59323858 chr11:59323848-59323858 chr11:59323848-59323859 chr11:59323848-59323858 chr11:59323849-59323859 chr11:59323847-59323860 chr11:59323848-59323859 chr11:59323847-59323860
18	YY1	chr11:59323744-59324136	K562	blood:	n/a	n/a
19	RCOR1	chr11:59323631-59324467	GM12878	blood:	n/a	n/a
20	TBL1XR1	chr11:59323332-59325162	K562	blood:	n/a	n/a
21	CBX3	chr11:59323319-59325328	HCT-116	colon:	n/a	n/a
22	CREB1	chr11:59323421-59325348	GM12878	blood:	n/a	n/a
23	USF2	chr11:59323703-59324039	K562	blood:	n/a	chr11:59323847-59323858
24	RPC155	chr11:59323681-59325254	K562	blood:	n/a	n/a
25	MAZ	chr11:59323788-59324260	GM12878	blood:	n/a	chr11:59323848-59323859 chr11:59323849-59323859 chr11:59323849-59323858 chr11:59323848-59323858 chr11:59323848-59323859 chr11:59323848-59323858 chr11:59323849-59323859 chr11:59323847-59323860 chr11:59323848-59323859 chr11:59323847-59323860
26	USF1	chr11:59323622-59324065	SK-N-SH_RA	brain:	n/a	chr11:59323847-59323858
27	TEAD4	chr11:59323482-59324383	SK-N-SH	brain:	n/a	n/a
28	ELK1	chr11:59323855-59324316	Hela-S3	cervix:	n/a	n/a
29	USF1	chr11:59323632-59324141	H1-hESC	embryonic stem cell:	n/a	chr11:59323847-59323858
30	NFIC	chr11:59323607-59324167	GM12878	blood:	n/a	n/a
31	RPC155	chr11:59323680-59324308	Hela-S3	cervix:	n/a	n/a
32	MYC	chr11:59323498-59325518	A549	lung:	n/a	chr11:59323848-59323859 chr11:59323849-59323859 chr11:59323849-59323858 chr11:59323848-59323858 chr11:59323848-59323859 chr11:59323848-59323858 chr11:59323849-59323859 chr11:59323847-59323860 chr11:59323848-59323859 chr11:59323847-59323860
33	USF1	chr11:59323738-59324034	HepG2	liver:	n/a	chr11:59323847-59323858
34	MYC	chr11:59323527-59325495	K562	blood:	n/a	chr11:59323848-59323859 chr11:59323849-59323859 chr11:59323849-59323858 chr11:59323848-59323858 chr11:59323848-59323859 chr11:59323848-59323858 chr11:59323849-59323859 chr11:59323847-59323860 chr11:59323848-59323859 chr11:59323847-59323860
35	MAX	chr11:59323577-59324208	SK-N-SH	brain:	n/a	chr11:59323848-59323859 chr11:59323849-59323859 chr11:59323849-59323858 chr11:59323848-59323858 chr11:59323848-59323859 chr11:59323848-59323858 chr11:59323849-59323859 chr11:59323847-59323860 chr11:59323848-59323859 chr11:59323847-59323860
36	CEBPB	chr11:59323688-59324261	K562	blood:	n/a	n/a
37	MYC	chr11:59323673-59325104	K562	blood:	n/a	chr11:59323848-59323859 chr11:59323849-59323859 chr11:59323849-59323858 chr11:59323848-59323858 chr11:59323848-59323859 chr11:59323848-59323858 chr11:59323849-59323859 chr11:59323847-59323860 chr11:59323848-59323859 chr11:59323847-59323860
38	MAFK	chr11:59323528-59324083	K562	blood:	n/a	n/a
39	RCOR1	chr11:59323240-59324150	K562	blood:	n/a	n/a
40	TAF1	chr11:59323783-59324158	SK-N-SH	brain:	n/a	n/a
41	CEBPB	chr11:59323753-59324206	A549	lung:	n/a	n/a
42	MYC	chr11:59323700-59324075	K562	blood:	n/a	chr11:59323848-59323859 chr11:59323849-59323859 chr11:59323849-59323858 chr11:59323848-59323858 chr11:59323848-59323859 chr11:59323848-59323858 chr11:59323849-59323859 chr11:59323847-59323860 chr11:59323848-59323859 chr11:59323847-59323860
43	MAX	chr11:59323589-59324162	H1-hESC	embryonic stem cell:	n/a	chr11:59323848-59323859 chr11:59323849-59323859 chr11:59323849-59323858 chr11:59323848-59323858 chr11:59323848-59323859 chr11:59323848-59323858 chr11:59323849-59323859 chr11:59323847-59323860 chr11:59323848-59323859 chr11:59323847-59323860
44	ELF1	chr11:59323515-59324174	K562	blood:	n/a	n/a
45	MAX	chr11:59323686-59324086	MCF-7	breast:	n/a	chr11:59323848-59323859 chr11:59323849-59323859 chr11:59323849-59323858 chr11:59323848-59323858 chr11:59323848-59323859 chr11:59323848-59323858 chr11:59323849-59323859 chr11:59323847-59323860 chr11:59323848-59323859 chr11:59323847-59323860
46	TBP	chr11:59323585-59324412	HepG2	liver:	n/a	n/a
47	KAP1	chr11:59323825-59324075	K562	blood:	n/a	n/a
48	RCOR1	chr11:59323268-59324163	HepG2	liver:	n/a	n/a
49	CREB1	chr11:59323715-59324037	A549	lung:	n/a	n/a
50	EP300	chr11:59323695-59324081	GM12878	blood:	n/a	chr11:59323731-59323745

No.	Distal block	Cell Line	Cell type
1	chr11:59321356..59325949-chr11:59373523..59377145,4	K562	blood:
2	chr11:59323867..59325962-chr11:59436503..59438202,2	K562	blood:
3	chr11:59316717..59319546-chr11:59322343..59325398,3	MCF-7	breast:
4	chr11:59322297..59324135-chr11:59434971..59436784,3	K562	blood:
5	chr11:59322976..59324823-chr11:59375645..59377849,2	K562	blood:
6	chr11:59322974..59324726-chr11:59383505..59386362,2	K562	blood:

Variant related genes	Relation type
RNU7-58P	TF binding region
ENSG00000166889	Chromatin interaction
ENSG00000110048	Chromatin interaction
ENSG00000255139	Chromatin interaction
ENSG00000255355	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12276505	1.00[CHB][hapmap]
rs12278910	1.00[CHB][hapmap]
rs12289921	1.00[CHB][hapmap]
rs12797334	1.00[CHB][hapmap]
rs1287449	0.86[AMR][1000 genomes]
rs1299800	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs1530995	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17153910	1.00[CHB][hapmap]
rs17153962	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17153966	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17153982	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17154025	1.00[JPT][hapmap]
rs2298868	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924493	0.91[ASN][1000 genomes]
rs2927184	1.00[JPT][hapmap]
rs35770960	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41340150	1.00[JPT][hapmap]
rs473490	1.00[CHB][hapmap]
rs473979	1.00[JPT][hapmap]
rs475145	1.00[JPT][hapmap]
rs486952	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs488331	1.00[CHB][hapmap]
rs4939293	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs495564	1.00[CHB][hapmap]
rs508411	1.00[JPT][hapmap]
rs518026	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs519535	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs520622	1.00[JPT][hapmap]
rs536910	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs537595	1.00[JPT][hapmap]
rs553700	1.00[CHB][hapmap]
rs555251	1.00[JPT][hapmap]
rs558505	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559150	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs563683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs565482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs567994	1.00[CHB][hapmap]
rs577224	1.00[JPT][hapmap]
rs579362	1.00[CHB][hapmap]
rs6591541	1.00[CHB][hapmap]
rs693110	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7116567	1.00[CHB][hapmap]
rs7124813	1.00[CHB][hapmap]
rs7939527	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952495	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8280	1.00[CHB][hapmap]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59319000-59327800	Weak transcription	Stomach Mucosa	stomach
2	chr11:59322800-59325800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:59322800-59326000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:59322800-59326200	Active TSS	H9 Cell Line	embryonic stem cell
5	chr11:59322800-59329000	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr11:59323000-59324200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:59323000-59324200	Active TSS	HSMM	muscle
8	chr11:59323000-59324200	Active TSS	NHEK	skin
9	chr11:59323000-59324400	Active TSS	Brain Cingulate Gyrus	brain
10	chr11:59323000-59324400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
11	chr11:59323000-59324400	Active TSS	NHLF	lung
12	chr11:59323000-59324600	Active TSS	NHDF-Ad	bronchial
13	chr11:59323000-59324800	Active TSS	Fetal Brain Female	brain
14	chr11:59323000-59324800	Active TSS	Stomach Smooth Muscle	stomach
15	chr11:59323000-59325000	Enhancers	Liver	Liver
16	chr11:59323000-59325000	Active TSS	Brain Angular Gyrus	brain
17	chr11:59323000-59325000	Active TSS	Brain Substantia Nigra	brain
18	chr11:59323000-59325000	Active TSS	Fetal Brain Male	brain
19	chr11:59323000-59325000	Active TSS	HSMMtube	muscle
20	chr11:59323000-59325200	Active TSS	Brain Inferior Temporal Lobe	brain
21	chr11:59323000-59325600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:59323000-59325600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:59323000-59325600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:59323000-59325600	Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr11:59323000-59325600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:59323000-59325600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
27	chr11:59323000-59325600	Bivalent/Poised TSS	Fetal Kidney	kidney
28	chr11:59323000-59325600	Active TSS	A549	lung
29	chr11:59323000-59325600	Active TSS	GM12878-XiMat	blood
30	chr11:59323000-59325800	Active TSS	HUES48 Cell Line	embryonic stem cell
31	chr11:59323000-59325800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:59323000-59326000	Active TSS	HUES6 Cell Line	embryonic stem cell
33	chr11:59323000-59326000	Active TSS	NH-A	brain
34	chr11:59323000-59326200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
35	chr11:59323000-59326200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr11:59323200-59324600	Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr11:59323200-59324800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr11:59323200-59324800	Active TSS	Duodenum Smooth Muscle	Duodenum
39	chr11:59323200-59324800	Active TSS	Fetal Lung	lung
40	chr11:59323200-59325000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr11:59323200-59325000	Enhancers	Spleen	Spleen
42	chr11:59323200-59325000	Flanking Active TSS	Hela-S3	cervix
43	chr11:59323200-59325200	Active TSS	Rectal Smooth Muscle	rectum
44	chr11:59323200-59325200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
45	chr11:59323200-59325400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr11:59323200-59325600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:59323200-59325600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:59323200-59325600	Active TSS	Fetal Intestine Large	intestine
49	chr11:59323200-59325800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr11:59323200-59325800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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