Variant report

Variant	rs2924493
Chromosome Location	chr11:59327887-59327888
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:59326882..59329448-chr11:59381512..59384615,3	MCF-7	breast:
2	chr11:59327473..59329060-chr11:59341857..59344264,2	K562	blood:
3	chr11:59326302..59328459-chr11:59344498..59347329,2	K562	blood:
4	chr11:59327282..59329404-chr11:59605781..59608762,2	K562	blood:
5	chr11:59327559..59329707-chr11:59434629..59437486,4	K562	blood:
6	chr11:59327816..59329707-chr11:59434629..59437740,3	K562	blood:
7	chr11:59327475..59330060-chr11:59381628..59383602,2	K562	blood:
8	chr11:59327752..59328252-chr17:78120476..78120984,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000141543	Chromatin interaction
ENSG00000255355	Chromatin interaction
ENSG00000110048	Chromatin interaction
ENSG00000255139	Chromatin interaction
ENSG00000166889	Chromatin interaction

rs_ID	r²[population]
rs1290466	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1530995	0.83[ASN][1000 genomes]
rs17153910	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17153962	0.82[ASN][1000 genomes]
rs17153966	0.82[ASN][1000 genomes]
rs17153982	0.82[ASN][1000 genomes]
rs2298868	0.91[ASN][1000 genomes]
rs2298869	0.91[ASN][1000 genomes]
rs2924491	0.91[ASN][1000 genomes]
rs3019740	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs35770960	0.82[ASN][1000 genomes]
rs41340150	0.81[ASN][1000 genomes]
rs486952	0.82[ASN][1000 genomes]
rs518026	0.91[ASN][1000 genomes]
rs519535	0.82[ASN][1000 genomes]
rs558505	0.91[ASN][1000 genomes]
rs559150	0.82[ASN][1000 genomes]
rs561604	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs563683	0.91[ASN][1000 genomes]
rs565482	0.82[ASN][1000 genomes]
rs7939527	0.91[ASN][1000 genomes]
rs7952495	0.91[ASN][1000 genomes]

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59322800-59329000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr11:59323600-59329000	Active TSS	Brain Anterior Caudate	brain
3	chr11:59324600-59328000	Weak transcription	Small Intestine	intestine
4	chr11:59326800-59328600	Active TSS	Brain Cingulate Gyrus	brain
5	chr11:59327200-59328200	Bivalent/Poised TSS	Fetal Brain Female	brain
6	chr11:59327200-59328600	Active TSS	Primary hematopoietic stem cells short term culture	blood
7	chr11:59327200-59328600	Active TSS	Fetal Heart	heart
8	chr11:59327200-59329000	Active TSS	H1 Cell Line	embryonic stem cell
9	chr11:59327200-59329000	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr11:59327200-59329000	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr11:59327200-59329000	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr11:59327400-59328000	Active TSS	HepG2	liver
13	chr11:59327400-59328200	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
14	chr11:59327400-59328600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:59327400-59328600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:59327400-59328600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:59327400-59328600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:59327400-59328600	Active TSS	Hela-S3	cervix
19	chr11:59327400-59328600	Active TSS	Osteobl	bone
20	chr11:59327400-59328800	Active TSS	Right Atrium	heart
21	chr11:59327400-59328800	Active TSS	Right Ventricle	heart
22	chr11:59327400-59329000	Active TSS	H9 Cell Line	embryonic stem cell
23	chr11:59327400-59329000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:59327400-59329000	Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr11:59327400-59329000	Active TSS	iPS-18 Cell Line	embryonic stem cell
26	chr11:59327400-59329000	Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr11:59327400-59329000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr11:59327400-59329000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:59327400-59329000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:59327400-59329000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:59327400-59329000	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr11:59327400-59329000	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr11:59327600-59328000	Flanking Active TSS	Primary B cells from peripheral blood	blood
34	chr11:59327600-59328000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:59327600-59328000	Enhancers	Aorta	Aorta
36	chr11:59327600-59328000	Flanking Active TSS	NH-A	brain
37	chr11:59327600-59328200	Flanking Active TSS	Primary B cells from cord blood	blood
38	chr11:59327600-59328200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
39	chr11:59327600-59328200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
40	chr11:59327600-59328600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr11:59327600-59328600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:59327600-59328600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:59327600-59328600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
44	chr11:59327600-59328600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr11:59327600-59328600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:59327600-59328600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr11:59327600-59328600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:59327600-59328600	Active TSS	Muscle Satellite Cultured Cells	--
49	chr11:59327600-59328600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr11:59327600-59328600	Active TSS	Brain Hippocampus Middle	brain

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