Variant report

Variant	rs1290466
Chromosome Location	chr11:59332051-59332052
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59330853..59332676-chr11:59434262..59437221,2	MCF-7	breast:
2	chr11:59332034..59337600-chr11:59380778..59383923,5	K562	blood:
3	chr11:59331210..59333080-chr11:59436613..59438618,2	K562	blood:
4	chr11:59331158..59335239-chr11:59432687..59436578,5	K562	blood:

Variant related genes	Relation type
ENSG00000110048	Chromatin interaction
ENSG00000255139	Chromatin interaction
ENSG00000166889	Chromatin interaction
ENSG00000255355	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11230020	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11230027	0.81[EUR][1000 genomes]
rs11230037	0.81[EUR][1000 genomes]
rs11821465	0.81[EUR][1000 genomes]
rs12271188	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12276505	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12278859	0.81[EUR][1000 genomes]
rs12278910	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12280606	0.81[EUR][1000 genomes]
rs12281969	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12289162	0.81[EUR][1000 genomes]
rs12289921	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12797334	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1287441	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1287442	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1287446	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1287448	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1287449	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1299800	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17153910	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1783212	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938690	0.81[EUR][1000 genomes]
rs2924493	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3015969	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3019740	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34350918	0.81[EUR][1000 genomes]
rs473490	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs488331	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4939294	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs495564	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs510249	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs519865	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs519873	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs532838	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536910	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs550822	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs553700	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55667192	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs561604	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs563276	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs567994	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591541	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs693110	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116567	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7124813	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73486934	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73486962	0.81[EUR][1000 genomes]
rs73486971	0.81[EUR][1000 genomes]
rs73486979	0.81[EUR][1000 genomes]
rs7952367	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8280	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59328600-59333200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:59328600-59333200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:59328600-59333200	Weak transcription	Esophagus	oesophagus
4	chr11:59328800-59333000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:59328800-59333200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr11:59328800-59333200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr11:59328800-59333400	Weak transcription	Spleen	Spleen
8	chr11:59329000-59332200	Weak transcription	Fetal Muscle Leg	muscle
9	chr11:59329000-59332400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:59329000-59332400	Weak transcription	GM12878-XiMat	blood
11	chr11:59329000-59332800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:59329000-59332800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr11:59329000-59333000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:59329000-59333000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:59329000-59333000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:59329000-59333000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr11:59329000-59333000	Weak transcription	Primary B cells from cord blood	blood
18	chr11:59329000-59333000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr11:59329000-59333000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:59329000-59333000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:59329000-59333000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:59329000-59333000	Weak transcription	Brain Anterior Caudate	brain
23	chr11:59329000-59333000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr11:59329000-59333000	Weak transcription	Brain Hippocampus Middle	brain
25	chr11:59329000-59333000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr11:59329000-59333000	Weak transcription	Fetal Thymus	thymus
27	chr11:59329000-59333000	Weak transcription	Right Atrium	heart
28	chr11:59329000-59333000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr11:59329000-59333000	Weak transcription	HSMMtube	muscle
30	chr11:59329000-59333000	Weak transcription	HUVEC	blood vessel
31	chr11:59329000-59333000	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr11:59329000-59333000	Weak transcription	NH-A	brain
33	chr11:59329000-59333000	Weak transcription	NHLF	lung
34	chr11:59329000-59333200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr11:59329000-59333200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr11:59329000-59333200	Weak transcription	Gastric	stomach
37	chr11:59329000-59333200	Weak transcription	Pancreas	Pancrea
38	chr11:59329000-59333200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr11:59329000-59333400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr11:59329200-59332800	Weak transcription	Fetal Muscle Trunk	muscle
41	chr11:59329200-59333000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:59329200-59333000	Weak transcription	Colonic Mucosa	Colon
43	chr11:59329200-59333200	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr11:59329200-59333200	Weak transcription	Fetal Brain Male	brain
45	chr11:59329400-59333000	Weak transcription	Primary B cells from peripheral blood	blood
46	chr11:59329400-59333000	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr11:59329400-59333200	Weak transcription	Primary T cells from cord blood	blood
48	chr11:59329400-59333200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr11:59329400-59333200	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr11:59329400-59333200	Weak transcription	Brain Germinal Matrix	brain

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Variant report

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