Variant report

Variant	rs536910
Chromosome Location	chr11:59346568-59346569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59340120..59342655-chr11:59345201..59347247,2	K562	blood:
2	chr11:59344776..59348199-chr11:59381246..59384061,4	K562	blood:
3	chr11:59326302..59328459-chr11:59344498..59347329,2	K562	blood:

Variant related genes	Relation type
ENSG00000255139	Chromatin interaction
ENSG00000110048	Chromatin interaction

Extended variants
information (count: 172 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:172)

rs_ID	r²[population]
rs1121991	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11230020	0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11230027	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11230037	0.96[YRI][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1151063	0.80[EUR][1000 genomes]
rs1151064	0.80[EUR][1000 genomes]
rs11821333	0.84[EUR][1000 genomes]
rs11821465	0.90[YRI][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11825669	1.00[CEU][hapmap]
rs12271188	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12272588	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12276505	1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12278199	1.00[CEU][hapmap]
rs12278859	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12278910	1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12280606	0.96[YRI][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12281969	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12285828	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12287975	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12289162	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12289921	1.00[CHB][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12292682	1.00[YRI][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12797334	1.00[CHB][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1287111	0.80[EUR][1000 genomes]
rs1287441	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1287442	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1287446	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1287448	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1287449	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1290457	0.84[EUR][1000 genomes]
rs1290459	0.84[EUR][1000 genomes]
rs1290466	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1299800	1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1530995	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17046	0.84[EUR][1000 genomes]
rs17153905	1.00[CEU][hapmap]
rs17153910	1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17153952	1.00[CEU][hapmap]
rs17153962	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17153982	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17154025	0.85[JPT][hapmap]
rs17154029	0.84[EUR][1000 genomes]
rs17154134	0.80[EUR][1000 genomes]
rs17154138	0.80[EUR][1000 genomes]
rs17154146	0.80[EUR][1000 genomes]
rs17154149	0.80[EUR][1000 genomes]
rs17154157	0.80[EUR][1000 genomes]
rs17154165	0.80[EUR][1000 genomes]
rs17154169	0.80[EUR][1000 genomes]
rs17154175	0.80[EUR][1000 genomes]
rs17154180	0.80[EUR][1000 genomes]
rs17154195	0.80[EUR][1000 genomes]
rs17154200	0.80[EUR][1000 genomes]
rs1783212	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1938690	1.00[YRI][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2186597	0.88[EUR][1000 genomes]
rs2298868	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2298869	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2509274	0.80[EUR][1000 genomes]
rs2509276	0.80[EUR][1000 genomes]
rs2509290	0.87[YRI][hapmap];0.84[EUR][1000 genomes]
rs2509730	0.80[EUR][1000 genomes]
rs2927183	0.84[EUR][1000 genomes]
rs3015969	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3019740	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3110322	0.84[EUR][1000 genomes]
rs3132748	0.84[EUR][1000 genomes]
rs34350918	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3781792	0.80[EUR][1000 genomes]
rs3781793	0.80[EUR][1000 genomes]
rs3862660	0.80[EUR][1000 genomes]
rs41340150	0.85[JPT][hapmap]
rs41384548	0.80[EUR][1000 genomes]
rs4301803	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4393334	1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs4515985	0.88[EUR][1000 genomes]
rs472177	1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs473087	0.84[EUR][1000 genomes]
rs473490	1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs473979	0.85[JPT][hapmap]
rs474844	0.84[EUR][1000 genomes]
rs475145	0.82[JPT][hapmap]
rs475706	0.84[EUR][1000 genomes]
rs478167	0.80[EUR][1000 genomes]
rs482355	0.80[EUR][1000 genomes]
rs485008	0.80[EUR][1000 genomes]
rs486587	0.80[EUR][1000 genomes]
rs486952	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs488331	1.00[CHB][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs492652	0.84[EUR][1000 genomes]
rs4939294	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs495564	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs498388	0.84[EUR][1000 genomes]
rs504016	0.80[EUR][1000 genomes]
rs506384	0.85[JPT][hapmap]
rs507235	0.80[EUR][1000 genomes]
rs508411	0.85[JPT][hapmap]
rs510122	0.80[EUR][1000 genomes]
rs510249	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs511785	0.80[EUR][1000 genomes]
rs511957	0.84[EUR][1000 genomes]
rs512695	0.80[EUR][1000 genomes]
rs516912	0.80[EUR][1000 genomes]
rs518026	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs519605	0.80[EUR][1000 genomes]
rs519865	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs519873	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs520622	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs521330	0.80[EUR][1000 genomes]
rs523016	0.80[EUR][1000 genomes]
rs528525	0.80[EUR][1000 genomes]
rs529270	0.80[EUR][1000 genomes]
rs532838	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs537595	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs537625	0.84[EUR][1000 genomes]
rs540684	0.84[EUR][1000 genomes]
rs550189	0.84[EUR][1000 genomes]
rs550822	0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs552601	0.84[EUR][1000 genomes]
rs553700	1.00[CHB][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs554149	0.84[EUR][1000 genomes]
rs554848	0.80[EUR][1000 genomes]
rs555175	0.80[EUR][1000 genomes]
rs555251	0.85[JPT][hapmap]
rs55667192	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs559150	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs561604	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs563276	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs565482	1.00[CHB][hapmap]
rs565983	0.80[EUR][1000 genomes]
rs567485	0.80[EUR][1000 genomes]
rs567994	1.00[CHB][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs569326	0.80[EUR][1000 genomes]
rs573592	0.80[EUR][1000 genomes]
rs57529518	0.80[EUR][1000 genomes]
rs577224	0.82[JPT][hapmap]
rs57871852	0.80[EUR][1000 genomes]
rs579192	0.84[EUR][1000 genomes]
rs579362	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs579373	0.80[EUR][1000 genomes]
rs580242	0.84[EUR][1000 genomes]
rs58169611	0.80[EUR][1000 genomes]
rs58775794	0.80[EUR][1000 genomes]
rs60009036	0.80[EUR][1000 genomes]
rs60094706	0.80[EUR][1000 genomes]
rs61636608	0.80[EUR][1000 genomes]
rs6591540	0.85[EUR][1000 genomes]
rs6591541	1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs693110	1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7114773	0.80[EUR][1000 genomes]
rs7116567	1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7118051	0.84[YRI][hapmap]
rs7119778	0.80[EUR][1000 genomes]
rs7120632	1.00[CEU][hapmap]
rs7124813	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7126593	1.00[YRI][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7131059	0.80[EUR][1000 genomes]
rs73486934	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73486962	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73486971	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73486979	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73486988	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73486997	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7939527	0.85[JPT][hapmap]
rs7941643	0.84[EUR][1000 genomes]
rs7946152	0.80[EUR][1000 genomes]
rs7947036	0.80[EUR][1000 genomes]
rs7947514	0.80[EUR][1000 genomes]
rs7947985	1.00[CEU][hapmap]
rs7952024	0.80[EUR][1000 genomes]
rs7952367	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8280	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59333800-59351800	Weak transcription	Fetal Heart	heart
2	chr11:59334200-59366200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:59334200-59382000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:59340600-59350400	Strong transcription	Fetal Muscle Trunk	muscle
5	chr11:59340800-59351000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:59340800-59351000	Strong transcription	Fetal Brain Female	brain
7	chr11:59340800-59378200	Strong transcription	Fetal Thymus	thymus
8	chr11:59341000-59347800	Strong transcription	Fetal Stomach	stomach
9	chr11:59341000-59350200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:59341000-59350400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:59341000-59350400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:59341000-59350400	Strong transcription	GM12878-XiMat	blood
13	chr11:59341000-59351800	Strong transcription	Liver	Liver
14	chr11:59341200-59350200	Strong transcription	Thymus	Thymus
15	chr11:59341400-59350600	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr11:59341400-59351800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr11:59341400-59351800	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr11:59341400-59352000	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr11:59341600-59350200	Strong transcription	Lung	lung
20	chr11:59341600-59350400	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr11:59341600-59350400	Strong transcription	K562	blood
22	chr11:59341600-59351800	Strong transcription	Primary B cells from peripheral blood	blood
23	chr11:59342000-59349000	Strong transcription	Brain Germinal Matrix	brain
24	chr11:59342000-59349600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr11:59342000-59350000	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr11:59342000-59350000	Strong transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:59342000-59350400	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr11:59342000-59350400	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr11:59342000-59352000	Strong transcription	Dnd41	blood
30	chr11:59342000-59352400	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr11:59342000-59352400	Strong transcription	Hela-S3	cervix
32	chr11:59342000-59352600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr11:59342000-59379000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:59342200-59348600	Strong transcription	Brain Inferior Temporal Lobe	brain
35	chr11:59342200-59349000	Strong transcription	HMEC	breast
36	chr11:59342200-59349200	Strong transcription	Brain Anterior Caudate	brain
37	chr11:59342200-59350200	Strong transcription	Left Ventricle	heart
38	chr11:59342200-59350400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr11:59342200-59350400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr11:59342200-59350600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:59342200-59350600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr11:59342200-59351800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr11:59342200-59352400	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr11:59342200-59358000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:59342200-59378200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr11:59342400-59346600	Strong transcription	H9 Cell Line	embryonic stem cell
47	chr11:59342400-59346800	Strong transcription	Small Intestine	intestine
48	chr11:59342400-59347600	Strong transcription	Gastric	stomach
49	chr11:59342400-59347600	Strong transcription	Pancreas	Pancrea
50	chr11:59342400-59349000	Strong transcription	Placenta Amnion	Placenta Amnion

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