Variant report

Variant	rs12278199
Chromosome Location	chr11:59318205-59318206
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:59316767..59319873-chr11:59382197..59385318,7	K562	blood:
2	chr11:57433763..57436720-chr11:59318054..59319755,2	K562	blood:
3	chr11:59318069..59320155-chr11:59327909..59330794,2	MCF-7	breast:
4	chr11:59313248..59321957-chr11:59433786..59439304,14	K562	blood:
5	chr11:59191985..59194660-chr11:59317769..59320610,2	K562	blood:
6	chr11:59316022..59320614-chr11:59433786..59439120,8	K562	blood:
7	chr11:59316717..59319546-chr11:59322343..59325398,3	MCF-7	breast:
8	chr11:59317031..59320121-chr11:59331388..59333967,3	MCF-7	breast:
9	chr11:59317678..59318434-chr14:103523305..103523925,2	Hela-S3	cervix:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OR4D9-1	chr11:59317491-59319113	NONHSAT021525

No data

Variant related genes	Relation type
ENSG00000255008	Chromatin interaction
ENSG00000110048	Chromatin interaction
ENSG00000166889	Chromatin interaction
ENSG00000255355	Chromatin interaction
ENSG00000198752	Chromatin interaction
ENSG00000255139	Chromatin interaction
ENSG00000156599	Chromatin interaction

rs_ID	r²[population]
rs11820677	1.00[EUR][1000 genomes]
rs11820756	1.00[EUR][1000 genomes]
rs11825352	1.00[EUR][1000 genomes]
rs11825669	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11825989	1.00[EUR][1000 genomes]
rs11826485	1.00[EUR][1000 genomes]
rs12278334	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17153905	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17153910	0.84[YRI][hapmap]
rs17153952	1.00[CEU][hapmap]
rs520622	1.00[CEU][hapmap]
rs536910	1.00[CEU][hapmap]
rs537595	1.00[CEU][hapmap]
rs58646788	1.00[EUR][1000 genomes]
rs60695388	1.00[EUR][1000 genomes]
rs61443200	1.00[EUR][1000 genomes]
rs7102219	1.00[EUR][1000 genomes]
rs7104228	1.00[EUR][1000 genomes]
rs7107349	1.00[EUR][1000 genomes]
rs7112903	1.00[EUR][1000 genomes]
rs7113230	0.87[EUR][1000 genomes]
rs7120632	1.00[CEU][hapmap]
rs7126329	1.00[EUR][1000 genomes]
rs7126712	1.00[EUR][1000 genomes]
rs7926408	1.00[EUR][1000 genomes]
rs7938530	1.00[EUR][1000 genomes]
rs7947985	1.00[CEU][hapmap]
rs7951531	1.00[EUR][1000 genomes]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59316200-59320400	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr11:59316200-59320400	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr11:59316400-59320200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:59316400-59320400	Active TSS	H1 Cell Line	embryonic stem cell
5	chr11:59316400-59320400	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr11:59316400-59320600	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr11:59316400-59321200	Active TSS	H9 Cell Line	embryonic stem cell
8	chr11:59316600-59319200	Active TSS	Brain Germinal Matrix	brain
9	chr11:59316600-59319800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr11:59316600-59319800	Active TSS	Brain Angular Gyrus	brain
11	chr11:59316600-59320200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:59316600-59320200	Active TSS	HSMM	muscle
13	chr11:59316600-59320400	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr11:59316800-59319200	Active TSS	Fetal Brain Female	brain
15	chr11:59316800-59319800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:59316800-59319800	Active TSS	Brain Anterior Caudate	brain
17	chr11:59316800-59319800	Active TSS	Brain Hippocampus Middle	brain
18	chr11:59316800-59320000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr11:59316800-59320000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:59316800-59320000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:59316800-59320200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:59316800-59320200	Active TSS	Fetal Kidney	kidney
23	chr11:59316800-59320600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:59317000-59318400	Active TSS	Skeletal Muscle Male	skeletal muscle
25	chr11:59317000-59318600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
26	chr11:59317000-59319200	Active TSS	GM12878-XiMat	blood
27	chr11:59317000-59319600	Active TSS	Fetal Brain Male	brain
28	chr11:59317000-59319600	Active TSS	Rectal Mucosa Donor 29	rectum
29	chr11:59317000-59319800	Active TSS	Fetal Intestine Small	intestine
30	chr11:59317000-59319800	Active TSS	Right Ventricle	heart
31	chr11:59317000-59320000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:59317000-59320000	Active TSS	Brain Inferior Temporal Lobe	brain
33	chr11:59317000-59320000	Active TSS	Fetal Lung	lung
34	chr11:59317000-59320000	Active TSS	Fetal Muscle Leg	muscle
35	chr11:59317000-59320200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:59317000-59320200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:59317000-59320400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:59317000-59320400	Active TSS	Ovary	ovary
39	chr11:59317200-59318400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
40	chr11:59317200-59318800	Active TSS	Primary T killer memory cells from peripheral blood	blood
41	chr11:59317200-59319200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr11:59317200-59319200	Active TSS	Colonic Mucosa	Colon
43	chr11:59317200-59319600	Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr11:59317200-59319600	Active TSS	Rectal Smooth Muscle	rectum
45	chr11:59317200-59319600	Active TSS	HSMMtube	muscle
46	chr11:59317200-59319800	Active TSS	Fetal Intestine Large	intestine
47	chr11:59317200-59319800	Active TSS	Right Atrium	heart
48	chr11:59317200-59319800	Active TSS	Stomach Smooth Muscle	stomach
49	chr11:59317200-59320000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:59317200-59320000	Active TSS	Breast Myoepithelial Primary Cells	Breast

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