Variant report

Variant	rs11825669
Chromosome Location	chr11:59475730-59475731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11820677	1.00[EUR][1000 genomes]
rs11820756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11826485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12278199	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12278334	1.00[EUR][1000 genomes]
rs17153905	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17153952	1.00[CEU][hapmap]
rs17154203	1.00[CEU][hapmap]
rs520622	1.00[CEU][hapmap]
rs536910	1.00[CEU][hapmap]
rs537595	1.00[CEU][hapmap]
rs58646788	1.00[EUR][1000 genomes]
rs60695388	1.00[EUR][1000 genomes]
rs61024344	1.00[AMR][1000 genomes]
rs61443200	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102219	1.00[EUR][1000 genomes]
rs7103127	1.00[AMR][1000 genomes]
rs7104228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7107349	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7112903	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7113230	0.87[EUR][1000 genomes]
rs7120632	1.00[CEU][hapmap]
rs7126329	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7126712	1.00[EUR][1000 genomes]
rs7926408	1.00[EUR][1000 genomes]
rs7938530	1.00[EUR][1000 genomes]
rs7947985	1.00[CEU][hapmap]
rs7951531	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517878	chr11:59441271-59480969	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59472400-59478200	Enhancers	NHEK	skin
2	chr11:59472600-59476400	Enhancers	HMEC	breast
3	chr11:59472600-59476800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:59472800-59476200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:59472800-59476400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:59472800-59476800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr11:59472800-59478200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:59472800-59478200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:59473400-59476800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:59473600-59476400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:59473600-59476600	Enhancers	Placenta	Placenta
12	chr11:59473600-59476600	Enhancers	HSMM	muscle
13	chr11:59473600-59476800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:59473800-59478200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:59474800-59476200	Enhancers	Fetal Intestine Large	intestine
16	chr11:59475000-59476200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:59475000-59477000	Weak transcription	Osteobl	bone
18	chr11:59475000-59477800	Weak transcription	Hela-S3	cervix
19	chr11:59475400-59476400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:59475400-59476400	Enhancers	A549	lung
21	chr11:59475400-59476400	Weak transcription	NH-A	brain
22	chr11:59475400-59476400	Weak transcription	NHLF	lung
23	chr11:59475400-59483200	Weak transcription	K562	blood
24	chr11:59475600-59475800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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