Variant report

Variant	rs7103127
Chromosome Location	chr11:59524764-59524765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMARCC2	chr11:59522998-59524966	Hela-S3	cervix:	n/a	n/a
2	MAX	chr11:59524343-59524802	K562	blood:	n/a	n/a
3	SIN3AK20	chr11:59524089-59524961	MCF-7	breast:	n/a	n/a
4	POLR2A	chr11:59524688-59525095	HepG2	liver:	n/a	n/a
5	RCOR1	chr11:59521461-59524801	K562	blood:	n/a	n/a
6	JUND	chr11:59521305-59524781	SK-N-SH	brain:	n/a	chr11:59523291-59523302
7	JUN	chr11:59521388-59525310	K562	blood:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:59524561..59526544-chr11:59527654..59529309,2	K562	blood:
2	chr11:59524470..59526644-chr11:59576559..59579477,2	K562	blood:
3	chr11:59524342..59526503-chr11:59895914..59898117,2	K562	blood:
4	chr11:59523011..59526082-chr11:59538557..59541399,3	K562	blood:
5	chr11:59435275..59437958-chr11:59523274..59525120,2	K562	blood:
6	chr11:59520214..59524923-chr11:59576549..59579669,4	MCF-7	breast:
7	chr11:59521605..59525070-chr11:59543036..59549785,6	MCF-7	breast:
8	chr11:59515464..59518097-chr11:59523433..59525658,2	K562	blood:
9	chr11:59520935..59525781-chr11:59552803..59557885,8	MCF-7	breast:
10	chr1:114301552..114304210-chr11:59521950..59524919,2	MCF-7	breast:
11	chr11:59524086..59527100-chr11:59562036..59566257,3	K562	blood:
12	chr11:59338335..59341054-chr11:59523391..59525087,2	K562	blood:
13	chr11:59519722..59526041-chr11:59575307..59578961,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254477	TF binding region
ENSG00000234964	Chromatin interaction
ENSG00000166900	Chromatin interaction
ENSG00000166902	Chromatin interaction
ENSG00000255355	Chromatin interaction
ENSG00000116793	Chromatin interaction
ENSG00000166889	Chromatin interaction
ENSG00000255538	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11820756	1.00[AMR][1000 genomes]
rs11825352	1.00[AMR][1000 genomes]
rs11825669	1.00[AMR][1000 genomes]
rs11825989	1.00[AMR][1000 genomes]
rs11826485	1.00[AMR][1000 genomes]
rs61024344	1.00[AMR][1000 genomes]
rs61443200	1.00[AMR][1000 genomes]
rs7104228	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752406	chr11:59490424-59529524	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	n/a
2	esv2755215	chr11:59515524-59529524	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	n/a
3	nsv1046086	chr11:59520424-59561455	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59521600-59524800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:59521600-59524800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
3	chr11:59521600-59524800	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr11:59523000-59525000	Flanking Active TSS	Primary hematopoietic stem cells	blood
5	chr11:59523200-59525000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr11:59523400-59524800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:59523400-59524800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
8	chr11:59523400-59525000	Flanking Active TSS	K562	blood
9	chr11:59523600-59524800	Enhancers	Primary B cells from peripheral blood	blood
10	chr11:59523600-59524800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:59523600-59524800	Flanking Active TSS	Duodenum Mucosa	Duodenum
12	chr11:59523600-59524800	Enhancers	Spleen	Spleen
13	chr11:59523600-59524800	Flanking Active TSS	Hela-S3	cervix
14	chr11:59523600-59525000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
15	chr11:59523600-59525200	Flanking Active TSS	HMEC	breast
16	chr11:59523800-59524800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr11:59523800-59524800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:59523800-59524800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr11:59523800-59524800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:59523800-59524800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr11:59523800-59525000	Enhancers	Gastric	stomach
22	chr11:59523800-59525200	Enhancers	Left Ventricle	heart
23	chr11:59523800-59525200	Enhancers	Ovary	ovary
24	chr11:59523800-59525200	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr11:59523800-59525200	Enhancers	HepG2	liver
26	chr11:59523800-59525600	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr11:59523800-59532000	Weak transcription	Esophagus	oesophagus
28	chr11:59523800-59533600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr11:59524000-59525000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:59524000-59525200	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:59524000-59525200	Enhancers	Small Intestine	intestine
32	chr11:59524000-59525400	Weak transcription	Right Atrium	heart
33	chr11:59524000-59525600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr11:59524000-59525600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:59524000-59539200	Weak transcription	Liver	Liver
36	chr11:59524200-59524800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:59524200-59524800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:59524200-59524800	Bivalent/Poised TSS	Fetal Brain Female	brain
39	chr11:59524200-59524800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr11:59524200-59524800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
41	chr11:59524200-59524800	Enhancers	NH-A	brain
42	chr11:59524200-59525000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr11:59524200-59525000	Enhancers	Adipose Nuclei	Adipose
44	chr11:59524200-59525200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:59524200-59525200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr11:59524200-59533800	Weak transcription	Fetal Heart	heart
47	chr11:59524200-59545200	Weak transcription	Brain Hippocampus Middle	brain
48	chr11:59524400-59524800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
49	chr11:59524400-59524800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr11:59524400-59524800	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links