Variant report

Variant	rs61024344
Chromosome Location	chr11:59541272-59541273
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59520565..59526888-chr11:59540206..59546311,15	MCF-7	breast:
2	chr11:59533582..59535558-chr11:59538883..59542385,3	K562	blood:
3	chr11:59523011..59526082-chr11:59538557..59541399,3	K562	blood:
4	chr11:59533196..59536602-chr11:59539532..59544445,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254477	Chromatin interaction
ENSG00000166900	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11820756	1.00[AMR][1000 genomes]
rs11825352	1.00[AMR][1000 genomes]
rs11825669	1.00[AMR][1000 genomes]
rs11825989	1.00[AMR][1000 genomes]
rs11826485	1.00[AMR][1000 genomes]
rs61443200	1.00[AMR][1000 genomes]
rs7103127	1.00[AMR][1000 genomes]
rs7104228	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046086	chr11:59520424-59561455	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59524200-59545200	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:59524400-59542200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:59524400-59545600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:59524400-59557000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:59524600-59557400	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:59524600-59573800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:59524800-59543000	Weak transcription	A549	lung
8	chr11:59524800-59543800	Weak transcription	NH-A	brain
9	chr11:59524800-59553400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:59524800-59555400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr11:59525200-59543600	Weak transcription	Hela-S3	cervix
12	chr11:59525400-59543400	Weak transcription	HMEC	breast
13	chr11:59525400-59551200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:59525600-59557800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:59526000-59541600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:59527800-59541800	Weak transcription	Fetal Stomach	stomach
17	chr11:59530800-59545000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:59531000-59541600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:59532000-59543800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:59533000-59544000	Weak transcription	Psoas Muscle	Psoas
21	chr11:59533000-59545000	Weak transcription	Brain Substantia Nigra	brain
22	chr11:59534400-59559600	Weak transcription	Fetal Brain Female	brain
23	chr11:59534600-59544600	Weak transcription	Aorta	Aorta
24	chr11:59534600-59554200	Weak transcription	HSMMtube	muscle
25	chr11:59534600-59571600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:59534800-59542200	Weak transcription	Ovary	ovary
27	chr11:59534800-59542600	Weak transcription	Osteobl	bone
28	chr11:59535200-59544800	Weak transcription	Colonic Mucosa	Colon
29	chr11:59535400-59543600	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr11:59535800-59545800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr11:59537600-59541600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr11:59537600-59543800	Weak transcription	NHLF	lung
33	chr11:59537600-59570400	Weak transcription	Fetal Kidney	kidney
34	chr11:59537800-59553200	Weak transcription	NHDF-Ad	bronchial
35	chr11:59538000-59545400	Genic enhancers	Fetal Intestine Large	intestine
36	chr11:59538200-59543600	Weak transcription	HepG2	liver
37	chr11:59538800-59541600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:59539000-59541400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
39	chr11:59539000-59541800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr11:59539000-59541800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:59539000-59545200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:59539200-59545600	Weak transcription	Brain Anterior Caudate	brain
43	chr11:59539400-59541800	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr11:59539400-59546600	Weak transcription	Esophagus	oesophagus
45	chr11:59539600-59542600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr11:59539600-59543600	Weak transcription	Liver	Liver
47	chr11:59539600-59544000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr11:59539600-59545000	Weak transcription	Brain Angular Gyrus	brain
49	chr11:59539600-59554200	Weak transcription	Right Ventricle	heart
50	chr11:59539800-59541400	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links