Variant report

Variant	rs61443200
Chromosome Location	chr11:59482508-59482509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:59482481-59482531	HL-60	blood:	n/a
2	chr11:59482481-59482531	MCF10A-Er-Src	breast:	n/a
3	chr11:59482481-59482531	HCT-116	colon:	n/a
4	chr11:59482481-59482531	HCM	heart:	n/a
5	chr11:59482481-59482531	NB4	blood:	n/a
6	chr11:59482481-59482531	LNCaP	prostate:	n/a
7	chr11:59482481-59482531	HCPEpiC	choroid plexus:	n/a
8	chr11:59482481-59482531	HPAEpiC	pulmonary alveolar:	n/a
9	chr11:59482481-59482531	HRE	kidney:	n/a
10	chr11:59482481-59482531	SAEC	small airway:	n/a
11	chr11:59482481-59482531	Caco-2	colon:	n/a
12	chr11:59482481-59482531	GM12878	blood:	n/a
13	chr11:59482481-59482531	A549	lung:	n/a
14	chr11:59482481-59482531	ProgFib	skin:	n/a
15	chr11:59482481-59482531	NHBE	bronchial:	n/a
16	chr11:59482481-59482531	AG10803	skin:	n/a
17	chr11:59482481-59482531	T-47D	breast:	n/a
18	chr11:59482481-59482531	HNPCEpiC	eye:	n/a
19	chr11:59482481-59482531	AG09309	skin:	n/a
20	chr11:59482481-59482531	BE2_C	brain:	n/a
21	chr11:59482481-59482531	AG04449	skin:	fetal
22	chr11:59482481-59482531	GM19239	blood:	n/a
23	chr11:59482481-59482531	H1-hESC	embryonic stem cell:	embryo
24	chr11:59482481-59482531	HUVEC	blood vessel:	n/a
25	chr11:59482481-59482531	SK-N-MC	brain:	n/a
26	chr11:59482481-59482531	NH-A	brain:	n/a
27	chr11:59482481-59482531	HAEpiC	amniotic membrane:	n/a
28	chr11:59482481-59482531	HRPEpiC	eye:	n/a
29	chr11:59482481-59482531	GM06990	blood:	n/a
30	chr11:59482481-59482531	HIPEpiC	eye:	n/a
31	chr11:59482481-59482531	ovcar-3	ovarian:	n/a
32	chr11:59482481-59482531	HRCEpiC	kidney:	n/a
33	chr11:59482481-59482531	SKMC	muscle:	n/a
34	chr11:59482481-59482531	SK-N-SH	brain:	n/a
35	chr11:59482481-59482531	IMR90	lung:	fetal
36	chr11:59482481-59482531	PANC-1	pancreas:	n/a
37	chr11:59482481-59482531	PrEC	prostate:	n/a
38	chr11:59482481-59482531	RPTEC	kidney:	n/a
39	chr11:59482481-59482531	ECC-1	luminal epithelium:	n/a
40	chr11:59482481-59482531	U87	brain:	n/a
41	chr11:59482481-59482531	HEK293	kidney:	embryo
42	chr11:59482481-59482531	Hepatocyte	liver:	n/a
43	chr11:59482481-59482531	GM12892	blood:	n/a
44	chr11:59482481-59482531	GM12891	blood:	n/a
45	chr11:59482481-59482531	NHDF-neo	bronchial:	n/a
46	chr11:59482481-59482531	K562	blood:	n/a
47	chr11:59482481-59482531	PFSK-1	brain:	n/a
48	chr11:59482481-59482531	HMEC	breast:	n/a
49	chr11:59482481-59482531	AoSMC	blood vessel:	n/a
50	chr11:59482481-59482531	Jurkat	blood:	n/a

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:59479738..59481796-chr11:59482319..59484828,2	K562	blood:
2	chr11:59436021..59437623-chr11:59481506..59483515,2	K562	blood:
3	chr11:59436021..59438206-chr11:59481506..59484047,3	K562	blood:
4	chr11:59479738..59482245-chr11:59482319..59485600,3	K562	blood:

No data

Variant related genes	Relation type
OR10V1	CpG island
ENSG00000166889	Chromatin interaction
ENSG00000172289	Chromatin interaction
ENSG00000166900	Chromatin interaction
ENSG00000255355	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11820677	1.00[EUR][1000 genomes]
rs11820756	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825352	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825669	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11825989	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11826485	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12278199	1.00[EUR][1000 genomes]
rs12278334	1.00[EUR][1000 genomes]
rs17153905	1.00[EUR][1000 genomes]
rs58646788	1.00[EUR][1000 genomes]
rs60695388	1.00[EUR][1000 genomes]
rs61024344	1.00[AMR][1000 genomes]
rs7102219	1.00[EUR][1000 genomes]
rs7103127	1.00[AMR][1000 genomes]
rs7104228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7107349	1.00[EUR][1000 genomes]
rs7112903	1.00[EUR][1000 genomes]
rs7113230	0.87[EUR][1000 genomes]
rs7126329	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7126712	1.00[EUR][1000 genomes]
rs7926408	1.00[EUR][1000 genomes]
rs7938530	1.00[EUR][1000 genomes]
rs7951531	1.00[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59475400-59483200	Weak transcription	K562	blood
2	chr11:59478200-59489600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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