Variant report
| Variant | rs7126712 |
|---|---|
| Chromosome Location | chr11:59468327-59468328 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs11820677 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11820756 | 1.00[EUR][1000 genomes] |
| rs11825352 | 1.00[EUR][1000 genomes] |
| rs11825669 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs11825989 | 1.00[EUR][1000 genomes] |
| rs11826485 | 1.00[EUR][1000 genomes] |
| rs12278199 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs12278334 | 1.00[EUR][1000 genomes] |
| rs17153905 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs17153952 | 1.00[CEU][hapmap] |
| rs17154203 | 1.00[CEU][hapmap] |
| rs41340150 | 1.00[GIH][hapmap] |
| rs520622 | 1.00[CEU][hapmap] |
| rs536910 | 1.00[CEU][hapmap] |
| rs537595 | 1.00[CEU][hapmap] |
| rs58646788 | 1.00[EUR][1000 genomes] |
| rs60695388 | 1.00[EUR][1000 genomes] |
| rs61443200 | 1.00[EUR][1000 genomes] |
| rs7102219 | 1.00[EUR][1000 genomes] |
| rs7104228 | 1.00[EUR][1000 genomes] |
| rs7107349 | 1.00[EUR][1000 genomes] |
| rs7112903 | 1.00[EUR][1000 genomes] |
| rs7113230 | 0.86[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7120632 | 1.00[CEU][hapmap] |
| rs7126329 | 1.00[EUR][1000 genomes] |
| rs7926408 | 1.00[EUR][1000 genomes] |
| rs7938530 | 1.00[EUR][1000 genomes] |
| rs7947985 | 1.00[CEU][hapmap] |
| rs7951531 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv517878 | chr11:59441271-59480969 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:59460400-59473400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
