Variant report
| Variant | rs7102219 |
|---|---|
| Chromosome Location | chr11:59515085-59515086 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | EBF1 | chr11:59514756-59515282 | GM12878 | blood: | n/a | chr11:59515105-59515116 chr11:59515106-59515116 chr11:59515104-59515117 |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| OR10V2P | TF binding region |
| ENSG00000254477 | Chromatin interaction |
| ENSG00000166900 | Chromatin interaction |
| ENSG00000254743 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11820677 | 1.00[EUR][1000 genomes] |
| rs11820756 | 1.00[EUR][1000 genomes] |
| rs11825352 | 1.00[EUR][1000 genomes] |
| rs11825669 | 1.00[EUR][1000 genomes] |
| rs11825989 | 1.00[EUR][1000 genomes] |
| rs11826485 | 1.00[EUR][1000 genomes] |
| rs12278199 | 1.00[EUR][1000 genomes] |
| rs12278334 | 1.00[EUR][1000 genomes] |
| rs17153905 | 1.00[EUR][1000 genomes] |
| rs58646788 | 1.00[EUR][1000 genomes] |
| rs60695388 | 1.00[EUR][1000 genomes] |
| rs61443200 | 1.00[EUR][1000 genomes] |
| rs7104228 | 1.00[EUR][1000 genomes] |
| rs7107349 | 1.00[EUR][1000 genomes] |
| rs7112903 | 1.00[EUR][1000 genomes] |
| rs7113230 | 0.87[EUR][1000 genomes] |
| rs7126329 | 1.00[EUR][1000 genomes] |
| rs7126712 | 1.00[EUR][1000 genomes] |
| rs7926408 | 1.00[EUR][1000 genomes] |
| rs7938530 | 1.00[EUR][1000 genomes] |
| rs7951531 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2752406 | chr11:59490424-59529524 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
