Variant report

Variant	rs7926408
Chromosome Location	chr11:59319922-59319923
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59318868..59320523-chr11:59367905..59369688,2	K562	blood:
2	chr11:59318069..59320155-chr11:59327909..59330794,2	MCF-7	breast:
3	chr11:59313248..59321957-chr11:59433786..59439304,14	K562	blood:
4	chr11:59191985..59194660-chr11:59317769..59320610,2	K562	blood:
5	chr11:59316022..59320614-chr11:59433786..59439120,8	K562	blood:
6	chr11:59317031..59320121-chr11:59331388..59333967,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255355	Chromatin interaction
ENSG00000166889	Chromatin interaction
ENSG00000110048	Chromatin interaction
ENSG00000255008	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1139126	1.00[AMR][1000 genomes]
rs11820677	1.00[EUR][1000 genomes]
rs11820756	1.00[EUR][1000 genomes]
rs11825352	1.00[EUR][1000 genomes]
rs11825669	1.00[EUR][1000 genomes]
rs11825989	1.00[EUR][1000 genomes]
rs11826485	1.00[EUR][1000 genomes]
rs12278199	1.00[EUR][1000 genomes]
rs12278334	1.00[EUR][1000 genomes]
rs17153848	1.00[AMR][1000 genomes]
rs17153853	1.00[AMR][1000 genomes]
rs17153905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17153923	1.00[AMR][1000 genomes]
rs34682137	1.00[AMR][1000 genomes]
rs58646788	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60278978	0.87[AFR][1000 genomes]
rs60695388	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61443200	1.00[EUR][1000 genomes]
rs7102219	1.00[EUR][1000 genomes]
rs7104228	1.00[EUR][1000 genomes]
rs7107349	1.00[EUR][1000 genomes]
rs7112903	1.00[EUR][1000 genomes]
rs7113230	0.87[EUR][1000 genomes]
rs7125274	1.00[AMR][1000 genomes]
rs7126329	1.00[EUR][1000 genomes]
rs7126712	1.00[EUR][1000 genomes]
rs7930912	1.00[AMR][1000 genomes]
rs7931157	1.00[AMR][1000 genomes]
rs7938530	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7947985	1.00[AMR][1000 genomes]
rs7951531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59316200-59320400	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr11:59316200-59320400	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr11:59316400-59320200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:59316400-59320400	Active TSS	H1 Cell Line	embryonic stem cell
5	chr11:59316400-59320400	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr11:59316400-59320600	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr11:59316400-59321200	Active TSS	H9 Cell Line	embryonic stem cell
8	chr11:59316600-59320200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:59316600-59320200	Active TSS	HSMM	muscle
10	chr11:59316600-59320400	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr11:59316800-59320000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:59316800-59320000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:59316800-59320000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:59316800-59320200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:59316800-59320200	Active TSS	Fetal Kidney	kidney
16	chr11:59316800-59320600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:59317000-59320000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:59317000-59320000	Active TSS	Brain Inferior Temporal Lobe	brain
19	chr11:59317000-59320000	Active TSS	Fetal Lung	lung
20	chr11:59317000-59320000	Active TSS	Fetal Muscle Leg	muscle
21	chr11:59317000-59320200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:59317000-59320200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:59317000-59320400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:59317000-59320400	Active TSS	Ovary	ovary
25	chr11:59317200-59320000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:59317200-59320000	Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr11:59317200-59320000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:59317200-59320000	Active TSS	Fetal Stomach	stomach
29	chr11:59317200-59320000	Active TSS	HMEC	breast
30	chr11:59317200-59320000	Active TSS	NHDF-Ad	bronchial
31	chr11:59317200-59320200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:59317200-59320200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:59317200-59320200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:59317200-59320200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:59317200-59320200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:59317200-59320400	Active TSS	A549	lung
37	chr11:59317200-59320600	Active TSS	HUES48 Cell Line	embryonic stem cell
38	chr11:59317200-59320600	Active TSS	iPS-18 Cell Line	embryonic stem cell
39	chr11:59317400-59320000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr11:59317400-59320000	Active TSS	Primary hematopoietic stem cells short term culture	blood
41	chr11:59317400-59320000	Active TSS	Muscle Satellite Cultured Cells	--
42	chr11:59317400-59320000	Active TSS	Brain Cingulate Gyrus	brain
43	chr11:59317400-59320000	Active TSS	K562	blood
44	chr11:59317400-59320000	Active TSS	NH-A	brain
45	chr11:59317400-59320000	Active TSS	NHLF	lung
46	chr11:59317400-59320000	Active TSS	Osteobl	bone
47	chr11:59317400-59320200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr11:59317400-59320200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr11:59317600-59320000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr11:59317600-59320000	Active TSS	Aorta	Aorta

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