Variant report

Variant	rs17153848
Chromosome Location	chr11:59277510-59277511
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1139126	1.00[AMR][1000 genomes]
rs17153833	1.00[YRI][hapmap]
rs17153840	1.00[YRI][hapmap]
rs17153853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17153905	1.00[AMR][1000 genomes]
rs17153923	1.00[AMR][1000 genomes]
rs34682137	1.00[AMR][1000 genomes]
rs58646788	1.00[AMR][1000 genomes]
rs60695388	1.00[AMR][1000 genomes]
rs7120632	0.85[YRI][hapmap]
rs7125274	1.00[AMR][1000 genomes]
rs7926408	1.00[AMR][1000 genomes]
rs7930912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7931157	1.00[AMR][1000 genomes]
rs7938530	1.00[AMR][1000 genomes]
rs7947985	1.00[AMR][1000 genomes]
rs7951531	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59276000-59278000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr11:59276000-59278200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:59276000-59279400	Enhancers	Primary hematopoietic stem cells	blood
4	chr11:59276200-59278200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:59276200-59279800	Enhancers	Primary T cells from cord blood	blood
6	chr11:59276600-59277600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr11:59276600-59277800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr11:59276600-59277800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr11:59276600-59278000	Weak transcription	Adipose Nuclei	Adipose
10	chr11:59276600-59278000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr11:59276600-59278600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr11:59276800-59277800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr11:59276800-59277800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr11:59276800-59278000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr11:59276800-59278400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:59277000-59278000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:59277200-59277600	Weak transcription	Dnd41	blood
18	chr11:59277400-59278600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links