Variant report

Variant	rs17153833
Chromosome Location	chr11:59258978-59258979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1139126	1.00[AMR][1000 genomes]
rs17153840	1.00[YRI][hapmap]
rs17153848	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17153853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17153905	1.00[AMR][1000 genomes]
rs17153923	1.00[AMR][1000 genomes]
rs34682137	1.00[AMR][1000 genomes]
rs58646788	1.00[AMR][1000 genomes]
rs60695388	1.00[AMR][1000 genomes]
rs7120632	0.82[YRI][hapmap]
rs7125274	1.00[AMR][1000 genomes]
rs7926408	1.00[AMR][1000 genomes]
rs7930912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7931157	1.00[AMR][1000 genomes]
rs7938530	1.00[AMR][1000 genomes]
rs7947985	1.00[AMR][1000 genomes]
rs7951531	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	esv3400070	chr11:59245677-59259456	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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