Variant report

Variant	rs7113230
Chromosome Location	chr11:59471009-59471010
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11820677	0.87[EUR][1000 genomes]
rs11820756	0.87[EUR][1000 genomes]
rs11825352	0.87[EUR][1000 genomes]
rs11825669	0.87[EUR][1000 genomes]
rs11825989	0.87[EUR][1000 genomes]
rs11826485	0.87[EUR][1000 genomes]
rs12278199	0.87[EUR][1000 genomes]
rs12278334	0.87[EUR][1000 genomes]
rs17153905	0.87[EUR][1000 genomes]
rs58646788	0.87[EUR][1000 genomes]
rs60695388	0.87[EUR][1000 genomes]
rs61443200	0.87[EUR][1000 genomes]
rs7102219	0.87[EUR][1000 genomes]
rs7104228	0.87[EUR][1000 genomes]
rs7107349	0.87[EUR][1000 genomes]
rs7112903	0.87[EUR][1000 genomes]
rs7126329	0.87[EUR][1000 genomes]
rs7126712	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7926408	0.87[EUR][1000 genomes]
rs7938530	0.87[EUR][1000 genomes]
rs7951531	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517878	chr11:59441271-59480969	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59460400-59473400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:59470200-59471200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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