Variant report

Variant	rs511785
Chromosome Location	chr11:59521461-59521462
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	UBTF	chr11:59521459-59524064	K562	blood:	n/a	n/a
2	ZNF143	chr11:59521414-59521869	GM12878	blood:	n/a	n/a
3	RAD21	chr11:59521310-59522012	HCT-116	colon:	n/a	chr11:59521600-59521619 chr11:59521605-59521615 chr11:59521603-59521616
4	MAX	chr11:59521399-59523549	ECC-1	luminal epithelium:	n/a	n/a
5	FOXP2	chr11:59521447-59521756	SK-N-MC	brain:	n/a	n/a
6	MAX	chr11:59521372-59523745	HepG2	liver:	n/a	n/a
7	CTCF	chr11:59521460-59521610	HMEC	breast:	n/a	n/a
8	MAZ	chr11:59521350-59521923	IMR90	lung:	n/a	n/a
9	CTCF	chr11:59521429-59521790	K562	blood:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
10	CTCF	chr11:59521409-59521863	HCT-116	colon:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
11	RAD21	chr11:59521247-59523103	SK-N-SH	brain:	n/a	chr11:59521600-59521619 chr11:59521605-59521615 chr11:59521603-59521616
12	CTCF	chr11:59521458-59521775	Lung_OC	lung:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
13	CTCF	chr11:59521411-59521833	HepG2	liver:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
14	RAD21	chr11:59521412-59521815	HepG2	liver:	n/a	chr11:59521600-59521619 chr11:59521605-59521615 chr11:59521603-59521616
15	SMC3	chr11:59521409-59522060	Hela-S3	cervix:	n/a	chr11:59521601-59521615 chr11:59521601-59521609 chr11:59521622-59521630 chr11:59521605-59521615
16	RAD21	chr11:59521353-59522092	MCF-7	breast:	n/a	chr11:59521600-59521619 chr11:59521605-59521615 chr11:59521603-59521616
17	RAD21	chr11:59521413-59521776	GM12878	blood:	n/a	chr11:59521600-59521619 chr11:59521605-59521615 chr11:59521603-59521616
18	CTCF	chr11:59521455-59521736	SK-N-SH_RA	brain:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
19	FOSL2	chr11:59521420-59521795	HepG2	liver:	n/a	n/a
20	SIN3AK20	chr11:59521442-59521937	PANC-1	pancreas:	n/a	n/a
21	CTCF	chr11:59520889-59523923	SK-N-SH	brain:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
22	USF1	chr11:59521437-59521895	A549	lung:	n/a	n/a
23	CTCF	chr11:59521429-59521719	A549	lung:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
24	ZEB1	chr11:59521394-59523791	HepG2	liver:	n/a	n/a
25	KAP1	chr11:59521408-59522767	HEK293	kidney:	n/a	n/a
26	ZC3H11A	chr11:59521455-59521760	K562	blood:	n/a	n/a
27	SP1	chr11:59521444-59521763	GM12878	blood:	n/a	chr11:59521549-59521563
28	CTCF	chr11:59521252-59522075	HCT-116	colon:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
29	CBX3	chr11:59521296-59522730	K562	blood:	n/a	n/a
30	CEBPB	chr11:59521431-59521818	Hela-S3	cervix:	n/a	n/a
31	SMC3	chr11:59521438-59521982	K562	blood:	n/a	chr11:59521601-59521615 chr11:59521601-59521609 chr11:59521622-59521630 chr11:59521605-59521615
32	RAD21	chr11:59521458-59521764	GM12878	blood:	n/a	chr11:59521600-59521619 chr11:59521605-59521615 chr11:59521603-59521616
33	MYBL2	chr11:59521392-59521857	HepG2	liver:	n/a	n/a
34	ATF2	chr11:59521445-59521896	H1-hESC	embryonic stem cell:	n/a	n/a
35	SIN3AK20	chr11:59521352-59523760	MCF-7	breast:	n/a	n/a
36	CTCF	chr11:59521344-59521898	MCF-7	breast:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
37	SIN3AK20	chr11:59521435-59521890	SK-N-SH	brain:	n/a	n/a
38	CTCF	chr11:59521426-59521779	GM12892	blood:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
39	CTCF	chr11:59521353-59521833	T-47D	breast:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
40	TCF12	chr11:59521384-59521949	ECC-1	luminal epithelium:	n/a	n/a
41	NR2F2	chr11:59521318-59521867	K562	blood:	n/a	n/a
42	CTCF	chr11:59521386-59521873	K562	blood:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
43	RAD21	chr11:59521415-59521806	Hela-S3	cervix:	n/a	chr11:59521600-59521619 chr11:59521605-59521615 chr11:59521603-59521616
44	CTCF	chr11:59521441-59521780	Spleen_OC	spleen:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
45	HDAC2	chr11:59521454-59521807	HepG2	liver:	n/a	n/a
46	ATF2	chr11:59521422-59521868	H1-hESC	embryonic stem cell:	n/a	n/a
47	CEBPB	chr11:59521371-59521843	H1-hESC	embryonic stem cell:	n/a	n/a
48	RAD21	chr11:59521437-59521796	K562	blood:	n/a	chr11:59521600-59521619 chr11:59521605-59521615 chr11:59521603-59521616
49	RAD21	chr11:59521408-59521819	HepG2	liver:	n/a	chr11:59521600-59521619 chr11:59521605-59521615 chr11:59521603-59521616
50	CTCF	chr11:59521414-59521772	ECC-1	luminal epithelium:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615

No.	Distal block	Cell Line	Cell type
1	chr11:59521037..59522134-chr11:59569735..59571070,7	MCF-7	breast:
2	chr11:59521192..59521888-chr11:59568592..59569530,2	MCF-7	breast:
3	chr11:59521347..59522076-chr11:59577896..59578446,2	MCF-7	breast:
4	chr11:59521183..59522129-chr11:59897665..59898553,3	K562	blood:
5	chr11:59520214..59524923-chr11:59576549..59579669,4	MCF-7	breast:
6	chr11:59521189..59522029-chr11:59569757..59570741,3	K562	blood:
7	chr11:59480505..59482058-chr11:59521372..59523220,2	MCF-7	breast:
8	chr11:59381725..59384642-chr11:59521273..59522941,2	K562	blood:
9	chr11:59520634..59522259-chr11:59568757..59570737,15	MCF-7	breast:
10	chr1:114300956..114303148-chr11:59521456..59522999,2	MCF-7	breast:
11	chr11:59520935..59525781-chr11:59552803..59557885,8	MCF-7	breast:
12	chr11:59513939..59516832-chr11:59518797..59521533,2	K562	blood:
13	chr11:59519722..59526041-chr11:59575307..59578961,7	MCF-7	breast:
14	chr11:59520651..59522378-chr11:59577196..59579780,2	K562	blood:

Variant related genes	Relation type
STX3	TF binding region
ENSG00000166902	Chromatin interaction
ENSG00000116793	Chromatin interaction
ENSG00000255538	Chromatin interaction
ENSG00000110048	Chromatin interaction
ENSG00000166900	Chromatin interaction
ENSG00000255139	Chromatin interaction
ENSG00000172289	Chromatin interaction

Extended variants
information (count: 212 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:209)

rs_ID	r²[population]
rs10501380	0.85[EUR][1000 genomes]
rs1121991	0.92[EUR][1000 genomes]
rs11230020	0.80[EUR][1000 genomes]
rs11230027	0.80[EUR][1000 genomes]
rs11230037	0.88[EUR][1000 genomes]
rs1151063	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1151064	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11821333	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11821465	0.88[EUR][1000 genomes]
rs12272588	0.92[EUR][1000 genomes]
rs12278859	0.88[EUR][1000 genomes]
rs12278910	0.80[EUR][1000 genomes]
rs12280606	0.88[EUR][1000 genomes]
rs12285828	0.90[EUR][1000 genomes]
rs12287975	0.84[EUR][1000 genomes]
rs12289162	0.88[EUR][1000 genomes]
rs12292682	0.92[EUR][1000 genomes]
rs12797334	0.80[EUR][1000 genomes]
rs1287111	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1287441	0.80[EUR][1000 genomes]
rs1287446	0.80[EUR][1000 genomes]
rs1287448	0.80[EUR][1000 genomes]
rs1290457	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1290459	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1290460	0.80[AMR][1000 genomes]
rs1299800	0.80[EUR][1000 genomes]
rs17046	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17153910	0.80[EUR][1000 genomes]
rs17154025	0.80[AMR][1000 genomes]
rs17154029	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17154134	1.00[EUR][1000 genomes]
rs17154138	1.00[EUR][1000 genomes]
rs17154146	1.00[EUR][1000 genomes]
rs17154149	1.00[EUR][1000 genomes]
rs17154157	1.00[EUR][1000 genomes]
rs17154165	1.00[EUR][1000 genomes]
rs17154169	1.00[EUR][1000 genomes]
rs17154175	1.00[EUR][1000 genomes]
rs17154180	1.00[EUR][1000 genomes]
rs17154195	1.00[EUR][1000 genomes]
rs17154200	1.00[EUR][1000 genomes]
rs17154222	1.00[EUR][1000 genomes]
rs17154227	0.98[EUR][1000 genomes]
rs1783212	0.80[EUR][1000 genomes]
rs1938690	0.88[EUR][1000 genomes]
rs2186597	0.92[EUR][1000 genomes]
rs2447309	0.80[AMR][1000 genomes]
rs2447310	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2508335	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2508339	0.80[AMR][1000 genomes]
rs2509274	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509275	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509276	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509279	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509290	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2509730	1.00[EUR][1000 genomes]
rs2927182	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2927183	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2927184	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2957223	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2957227	0.80[AMR][1000 genomes]
rs3015969	0.80[EUR][1000 genomes]
rs3110321	0.85[AMR][1000 genomes]
rs3110322	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3132748	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34350918	0.88[EUR][1000 genomes]
rs3781792	1.00[EUR][1000 genomes]
rs3781793	1.00[EUR][1000 genomes]
rs3862660	1.00[EUR][1000 genomes]
rs41384548	1.00[EUR][1000 genomes]
rs4301803	0.92[EUR][1000 genomes]
rs4356243	0.98[EUR][1000 genomes]
rs4393334	0.92[EUR][1000 genomes]
rs4515985	0.92[EUR][1000 genomes]
rs471369	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs472152	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs472177	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs473087	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs473490	0.80[EUR][1000 genomes]
rs473679	0.80[AMR][1000 genomes]
rs473979	0.80[AMR][1000 genomes]
rs474844	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs475145	0.80[AMR][1000 genomes]
rs475706	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs475800	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs477577	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs477729	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs478167	1.00[EUR][1000 genomes]
rs478924	0.80[AMR][1000 genomes]
rs479264	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs481893	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482355	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482356	1.00[EUR][1000 genomes]
rs484030	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs484083	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs484814	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484895	1.00[EUR][1000 genomes]
rs485008	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs485803	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs486587	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs487312	0.80[AMR][1000 genomes]
rs488331	0.80[EUR][1000 genomes]
rs492652	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs493025	0.80[AMR][1000 genomes]
rs4939294	0.80[EUR][1000 genomes]
rs494110	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs495564	0.80[EUR][1000 genomes]
rs496938	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs497596	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs498099	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs498165	0.80[AMR][1000 genomes]
rs498299	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs498388	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs499054	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs501288	0.80[AMR][1000 genomes]
rs504016	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs504320	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs506384	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs507235	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs508411	0.80[AMR][1000 genomes]
rs510122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511263	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs511957	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs512194	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs512690	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs512695	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs513979	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs516912	1.00[EUR][1000 genomes]
rs519605	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs519865	0.80[EUR][1000 genomes]
rs519873	0.80[EUR][1000 genomes]
rs521330	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523016	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524102	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs526672	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs528525	1.00[EUR][1000 genomes]
rs529270	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs532293	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs532838	0.80[EUR][1000 genomes]
rs533166	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536544	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536910	0.80[EUR][1000 genomes]
rs537595	0.80[AMR][1000 genomes]
rs537625	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs538169	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs540684	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs540989	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs549086	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs550189	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs550449	0.80[AMR][1000 genomes]
rs550822	0.80[EUR][1000 genomes]
rs552601	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs553700	0.80[EUR][1000 genomes]
rs554149	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs554460	0.80[AMR][1000 genomes]
rs554848	1.00[EUR][1000 genomes]
rs555175	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs555251	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs55667192	0.80[EUR][1000 genomes]
rs558569	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs561029	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs561604	0.80[EUR][1000 genomes]
rs562657	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs563267	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs563276	0.80[EUR][1000 genomes]
rs563800	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs565026	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs565983	1.00[EUR][1000 genomes]
rs567253	0.80[AMR][1000 genomes]
rs567485	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567603	1.00[EUR][1000 genomes]
rs569326	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs571451	0.80[AMR][1000 genomes]
rs573592	1.00[EUR][1000 genomes]
rs57529518	1.00[EUR][1000 genomes]
rs577224	0.80[AMR][1000 genomes]
rs577644	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57871852	1.00[EUR][1000 genomes]
rs579192	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs579373	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580242	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs581265	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58169611	1.00[EUR][1000 genomes]
rs58775794	1.00[EUR][1000 genomes]
rs60009036	1.00[EUR][1000 genomes]
rs60094706	1.00[EUR][1000 genomes]
rs61636608	1.00[EUR][1000 genomes]
rs6591541	0.80[EUR][1000 genomes]
rs693110	0.80[EUR][1000 genomes]
rs7108731	0.81[EUR][1000 genomes]
rs7114773	1.00[EUR][1000 genomes]
rs7117509	0.85[EUR][1000 genomes]
rs7119778	1.00[EUR][1000 genomes]
rs7123969	0.98[EUR][1000 genomes]
rs7126593	0.92[EUR][1000 genomes]
rs7131059	1.00[EUR][1000 genomes]
rs73486962	0.88[EUR][1000 genomes]
rs73486971	0.88[EUR][1000 genomes]
rs73486979	0.88[EUR][1000 genomes]
rs73486988	0.92[EUR][1000 genomes]
rs73486997	0.92[EUR][1000 genomes]
rs7933970	0.98[EUR][1000 genomes]
rs7941643	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7946152	1.00[EUR][1000 genomes]
rs7947036	1.00[EUR][1000 genomes]
rs7947514	1.00[EUR][1000 genomes]
rs7952024	1.00[EUR][1000 genomes]
rs7952367	0.80[EUR][1000 genomes]
rs8280	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752406	chr11:59490424-59529524	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	n/a
2	esv2755215	chr11:59515524-59529524	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	n/a
3	nsv1046086	chr11:59520424-59561455	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59519000-59521600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr11:59519600-59521600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:59520000-59521600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:59521000-59521600	Enhancers	Colonic Mucosa	Colon
5	chr11:59521000-59521600	Bivalent Enhancer	Fetal Brain Male	brain
6	chr11:59521000-59521600	Enhancers	Placenta	Placenta
7	chr11:59521200-59521600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:59521200-59521600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr11:59521200-59521600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr11:59521200-59521600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:59521200-59521600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:59521200-59521600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:59521200-59521600	Enhancers	Brain Cingulate Gyrus	brain
14	chr11:59521200-59521600	Enhancers	Brain Hippocampus Middle	brain
15	chr11:59521200-59521600	Flanking Active TSS	Duodenum Mucosa	Duodenum
16	chr11:59521200-59521600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr11:59521200-59521600	Enhancers	K562	blood
18	chr11:59521200-59522000	Active TSS	Rectal Smooth Muscle	rectum
19	chr11:59521200-59523600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:59521400-59521600	Active TSS	HUES64 Cell Line	embryonic stem cell
21	chr11:59521400-59521600	Active TSS	iPS-18 Cell Line	embryonic stem cell
22	chr11:59521400-59521600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:59521400-59521600	Active TSS	Primary hematopoietic stem cells	blood
24	chr11:59521400-59521600	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr11:59521400-59521600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr11:59521400-59521600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:59521400-59521600	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr11:59521400-59521600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:59521400-59521600	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr11:59521400-59521600	Bivalent Enhancer	Fetal Muscle Leg	muscle
31	chr11:59521400-59521600	Enhancers	Fetal Thymus	thymus
32	chr11:59521400-59521600	Enhancers	Thymus	Thymus
33	chr11:59521400-59521600	Enhancers	Dnd41	blood
34	chr11:59521400-59521600	Enhancers	GM12878-XiMat	blood
35	chr11:59521400-59521600	Enhancers	HSMM	muscle
36	chr11:59521400-59521600	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr11:59521400-59521600	Enhancers	NHEK	skin
38	chr11:59521400-59521800	Active TSS	iPS-15b Cell Line	embryonic stem cell
39	chr11:59521400-59521800	Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr11:59521400-59521800	Active TSS	Fetal Brain Female	brain
41	chr11:59521400-59521800	Active TSS	Hela-S3	cervix
42	chr11:59521400-59522000	Active TSS	Primary T cells from cord blood	blood
43	chr11:59521400-59522000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr11:59521400-59522400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
45	chr11:59521400-59522400	Flanking Active TSS	Stomach Smooth Muscle	stomach
46	chr11:59521400-59523400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr11:59521400-59523400	Active TSS	Brain Angular Gyrus	brain
48	chr11:59521400-59523600	Active TSS	Rectal Mucosa Donor 29	rectum
49	chr11:59521400-59523800	Active TSS	HUES6 Cell Line	embryonic stem cell
50	chr11:59521400-59524000	Active TSS	H9 Cell Line	embryonic stem cell

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