Variant report

Variant	rs567253
Chromosome Location	chr11:59499283-59499284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 172 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:171)

rs_ID	r²[population]
rs10501380	1.00[CHB][hapmap]
rs11230020	1.00[CHB][hapmap]
rs11230037	1.00[CHB][hapmap]
rs1151063	1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs1151064	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs11820340	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11821465	1.00[CHB][hapmap]
rs12270043	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12275314	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12276956	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12280446	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12280606	1.00[CHB][hapmap]
rs12282618	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12292682	1.00[CHB][hapmap]
rs1287111	1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs1290457	0.81[ASN][1000 genomes]
rs1290460	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1299800	0.82[JPT][hapmap]
rs1530995	1.00[JPT][hapmap];0.85[YRI][hapmap]
rs17153962	1.00[JPT][hapmap];0.85[YRI][hapmap]
rs17153982	1.00[JPT][hapmap];0.82[YRI][hapmap]
rs17154025	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17154134	1.00[CHB][hapmap]
rs17154142	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17154146	1.00[CHB][hapmap]
rs17154165	1.00[CHB][hapmap]
rs17154180	1.00[CHB][hapmap]
rs17154200	1.00[CHB][hapmap]
rs17154203	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17154205	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17154216	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17154220	1.00[EUR][1000 genomes]
rs17154227	1.00[CHB][hapmap]
rs17596862	1.00[CHB][hapmap]
rs17597065	1.00[CHB][hapmap]
rs1938690	1.00[CHB][hapmap]
rs2298589	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2298868	1.00[JPT][hapmap]
rs2298869	1.00[JPT][hapmap]
rs2447309	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2447310	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2508335	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs2508339	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2509274	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs2509275	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs2509279	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs2509290	1.00[CHB][hapmap]
rs2509730	1.00[CHB][hapmap]
rs2927183	0.80[AMR][1000 genomes]
rs2927184	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2957223	0.86[AMR][1000 genomes]
rs2957227	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3110321	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35211634	1.00[CHB][hapmap]
rs3781792	1.00[CHB][hapmap]
rs41340150	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs41384548	1.00[CHB][hapmap]
rs4356243	1.00[CHB][hapmap]
rs4393334	1.00[CHB][hapmap]
rs471369	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs472152	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs472177	1.00[CHB][hapmap]
rs473087	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs473679	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs473912	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs473979	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs475145	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs475706	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs477577	0.84[AMR][1000 genomes]
rs477729	0.84[AMR][1000 genomes]
rs478167	1.00[CHB][hapmap]
rs478924	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs479264	0.80[AMR][1000 genomes]
rs481893	0.82[AMR][1000 genomes]
rs482355	1.00[CHB][hapmap]
rs482356	1.00[CHB][hapmap]
rs484814	0.80[AMR][1000 genomes]
rs485803	1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs486587	0.80[AMR][1000 genomes]
rs486952	1.00[JPT][hapmap];0.85[YRI][hapmap]
rs487312	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs492652	0.81[ASN][1000 genomes]
rs493025	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs494110	0.84[AMR][1000 genomes]
rs496492	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs496938	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs497596	0.82[AMR][1000 genomes]
rs498099	1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs498165	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs498299	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs499037	0.84[AMR][1000 genomes]
rs499054	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs501288	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs504016	1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs504320	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs506384	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs507235	0.80[AMR][1000 genomes]
rs508411	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs510122	0.80[AMR][1000 genomes]
rs511263	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs511785	0.80[AMR][1000 genomes]
rs511957	0.81[ASN][1000 genomes]
rs512194	1.00[CHB][hapmap]
rs512690	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs513979	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs516912	1.00[CHB][hapmap]
rs518026	1.00[JPT][hapmap];0.85[YRI][hapmap]
rs519605	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs520622	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs522957	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs523016	1.00[CHB][hapmap]
rs523932	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs524102	1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs526672	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs528525	1.00[CHB][hapmap]
rs529270	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs532293	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs533166	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs536544	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs536910	0.82[JPT][hapmap]
rs537595	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs537625	0.84[AMR][1000 genomes]
rs538169	0.82[AMR][1000 genomes]
rs540684	1.00[CHB][hapmap]
rs540989	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs548163	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs549086	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs550189	0.82[AMR][1000 genomes]
rs550449	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs552601	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs554460	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs554848	1.00[CHB][hapmap]
rs555175	0.80[AMR][1000 genomes]
rs555251	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs558569	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs559150	1.00[JPT][hapmap];0.85[YRI][hapmap]
rs559192	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs561029	0.80[AMR][1000 genomes]
rs562076	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs562657	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs563267	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs563800	0.80[AMR][1000 genomes]
rs565026	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs565482	1.00[JPT][hapmap]
rs567485	0.80[AMR][1000 genomes]
rs569326	0.80[AMR][1000 genomes]
rs571451	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs572138	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs573592	1.00[CHB][hapmap]
rs577224	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs577644	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs579373	1.00[CHB][hapmap]
rs59057725	1.00[EUR][1000 genomes]
rs60146927	1.00[EUR][1000 genomes]
rs60628632	1.00[EUR][1000 genomes]
rs60659006	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61370741	1.00[EUR][1000 genomes]
rs7119778	1.00[CHB][hapmap]
rs7123969	1.00[CHB][hapmap]
rs7126593	1.00[CHB][hapmap]
rs7131059	1.00[CHB][hapmap]
rs73488820	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73488834	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7927187	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7937245	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7937684	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7939527	1.00[JPT][hapmap]
rs7947036	1.00[CHB][hapmap]
rs7947514	1.00[CHB][hapmap]
rs7952024	1.00[CHB][hapmap]
rs7952495	1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752406	chr11:59490424-59529524	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59497800-59500400	Enhancers	Fetal Intestine Large	intestine
2	chr11:59497800-59500800	Enhancers	Fetal Intestine Small	intestine
3	chr11:59498000-59499400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr11:59498600-59502800	Weak transcription	Fetal Kidney	kidney
5	chr11:59498800-59499400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:59498800-59499400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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