Variant report
| Variant | rs17154220 |
|---|---|
| Chromosome Location | chr11:59591562-59591563 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:59576781..59579599-chr11:59589600..59592201,3 | K562 | blood: | |
| 2 | chr11:59590289..59592915-chr11:59600247..59604026,3 | K562 | blood: | |
| 3 | chr11:59590046..59591697-chr11:59685948..59687158,11 | MCF-7 | breast: | |
| 4 | chr11:59590109..59592217-chr11:59597177..59598935,2 | K562 | blood: | |
| 5 | chr11:59590610..59592173-chr11:59593790..59596614,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000134812 | Chromatin interaction |
| ENSG00000166902 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:49)
| rs_ID | r2[population] |
|---|---|
| rs12275314 | 1.00[EUR][1000 genomes] |
| rs12280446 | 1.00[EUR][1000 genomes] |
| rs12282618 | 1.00[EUR][1000 genomes] |
| rs1290460 | 1.00[EUR][1000 genomes] |
| rs17154025 | 0.87[EUR][1000 genomes] |
| rs17154142 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17154203 | 1.00[ASN][1000 genomes] |
| rs17154205 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17154216 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2298589 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2447309 | 1.00[EUR][1000 genomes] |
| rs2508339 | 1.00[EUR][1000 genomes] |
| rs2927184 | 1.00[EUR][1000 genomes] |
| rs2957227 | 1.00[EUR][1000 genomes] |
| rs3110321 | 1.00[EUR][1000 genomes] |
| rs473679 | 1.00[EUR][1000 genomes] |
| rs473912 | 1.00[EUR][1000 genomes] |
| rs473979 | 1.00[EUR][1000 genomes] |
| rs475145 | 1.00[EUR][1000 genomes] |
| rs478924 | 1.00[EUR][1000 genomes] |
| rs493025 | 1.00[EUR][1000 genomes] |
| rs498165 | 1.00[EUR][1000 genomes] |
| rs501288 | 1.00[EUR][1000 genomes] |
| rs504320 | 1.00[EUR][1000 genomes] |
| rs506384 | 1.00[EUR][1000 genomes] |
| rs508411 | 1.00[EUR][1000 genomes] |
| rs511263 | 1.00[EUR][1000 genomes] |
| rs512690 | 1.00[EUR][1000 genomes] |
| rs532293 | 1.00[EUR][1000 genomes] |
| rs550449 | 1.00[EUR][1000 genomes] |
| rs554460 | 1.00[EUR][1000 genomes] |
| rs555251 | 1.00[EUR][1000 genomes] |
| rs558569 | 1.00[EUR][1000 genomes] |
| rs559192 | 1.00[EUR][1000 genomes] |
| rs565026 | 1.00[EUR][1000 genomes] |
| rs567253 | 1.00[EUR][1000 genomes] |
| rs571451 | 1.00[EUR][1000 genomes] |
| rs572138 | 1.00[EUR][1000 genomes] |
| rs577224 | 1.00[EUR][1000 genomes] |
| rs577644 | 1.00[EUR][1000 genomes] |
| rs59057725 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60146927 | 1.00[EUR][1000 genomes] |
| rs60628632 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60659006 | 1.00[EUR][1000 genomes] |
| rs61370741 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61463035 | 1.00[ASN][1000 genomes] |
| rs73488820 | 1.00[EUR][1000 genomes] |
| rs7937245 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7937684 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
