Variant report

Variant	rs577644
Chromosome Location	chr11:59515494-59515495
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59514703..59516740-chr11:59522091..59524203,2	MCF-7	breast:
2	chr11:59507824..59511507-chr11:59512548..59517699,5	K562	blood:
3	chr11:59501872..59503940-chr11:59513222..59515810,2	K562	blood:

Variant related genes	Relation type
ENSG00000254743	Chromatin interaction
ENSG00000254477	Chromatin interaction
ENSG00000166900	Chromatin interaction

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs1151063	0.81[ASN][1000 genomes]
rs1151064	0.81[ASN][1000 genomes]
rs11820340	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12270043	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12275314	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12276956	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12280446	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12282618	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1287111	0.81[ASN][1000 genomes]
rs1290457	0.83[AMR][1000 genomes]
rs1290460	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17046	0.81[AMR][1000 genomes]
rs17154025	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17154142	1.00[EUR][1000 genomes]
rs17154205	1.00[EUR][1000 genomes]
rs17154216	1.00[EUR][1000 genomes]
rs17154220	1.00[EUR][1000 genomes]
rs2298589	1.00[EUR][1000 genomes]
rs2447309	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2447310	0.84[AMR][1000 genomes]
rs2508335	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2508339	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2509274	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2509275	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2509276	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2509279	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2927182	0.88[AMR][1000 genomes]
rs2927183	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2927184	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957227	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3110321	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs471369	0.87[AMR][1000 genomes]
rs472152	0.84[AMR][1000 genomes]
rs473087	0.87[AMR][1000 genomes]
rs473679	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs473912	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs473979	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs475145	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs475706	0.87[AMR][1000 genomes]
rs477577	0.84[AMR][1000 genomes]
rs477729	0.84[AMR][1000 genomes]
rs478924	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs479264	0.89[AMR][1000 genomes]
rs481893	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs482355	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs484814	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs485008	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs485803	0.84[AMR][1000 genomes]
rs486587	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs487312	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs492652	0.81[AMR][1000 genomes]
rs493025	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs494110	0.84[AMR][1000 genomes]
rs496492	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs496938	0.85[AMR][1000 genomes]
rs497596	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs498099	0.85[AMR][1000 genomes]
rs498165	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs498299	0.87[AMR][1000 genomes]
rs499054	0.87[AMR][1000 genomes]
rs501288	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs504016	0.81[ASN][1000 genomes]
rs504320	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs506384	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs507235	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs508411	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs510122	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs511263	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511785	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs511957	0.83[AMR][1000 genomes]
rs512194	0.81[AMR][1000 genomes]
rs512690	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs512695	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs513979	0.84[AMR][1000 genomes]
rs519605	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs520622	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs521330	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs522957	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs523016	0.81[ASN][1000 genomes]
rs523932	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs524102	0.84[AMR][1000 genomes]
rs526672	0.85[AMR][1000 genomes]
rs529270	0.81[ASN][1000 genomes]
rs532293	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs533166	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs536544	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs537595	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs537625	0.84[AMR][1000 genomes]
rs538169	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs540684	0.81[AMR][1000 genomes]
rs540989	0.84[AMR][1000 genomes]
rs548163	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs549086	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs550189	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs550449	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs552601	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs554460	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs555175	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs555251	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558569	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559192	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs561029	0.89[AMR][1000 genomes]
rs562657	0.87[AMR][1000 genomes]
rs563267	0.87[AMR][1000 genomes]
rs563800	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs565026	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567253	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs567485	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs569326	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs571451	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs572138	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs577224	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs579373	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs580242	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs581265	0.81[ASN][1000 genomes]
rs59057725	1.00[EUR][1000 genomes]
rs60146927	1.00[EUR][1000 genomes]
rs60628632	1.00[EUR][1000 genomes]
rs60659006	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61370741	1.00[EUR][1000 genomes]
rs73488820	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73488834	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7927187	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7937245	1.00[EUR][1000 genomes]
rs7937684	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752406	chr11:59490424-59529524	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links