Variant report

Variant	rs472152
Chromosome Location	chr11:59498158-59498159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 183 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:182)

rs_ID	r²[population]
rs10501380	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1121991	0.81[EUR][1000 genomes]
rs11230036	1.00[CEU][hapmap]
rs1151063	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1151064	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11821333	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12272588	0.81[EUR][1000 genomes]
rs12276505	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12287696	1.00[CEU][hapmap]
rs12290453	1.00[CEU][hapmap]
rs12292682	0.81[EUR][1000 genomes]
rs1287111	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1290457	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1290459	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1290460	0.84[AMR][1000 genomes]
rs17046	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17154025	0.84[AMR][1000 genomes]
rs17154029	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17154053	0.83[EUR][1000 genomes]
rs17154134	0.81[EUR][1000 genomes]
rs17154138	0.81[EUR][1000 genomes]
rs17154146	0.81[EUR][1000 genomes]
rs17154149	0.81[EUR][1000 genomes]
rs17154157	0.81[EUR][1000 genomes]
rs17154165	0.81[EUR][1000 genomes]
rs17154169	0.81[EUR][1000 genomes]
rs17154175	0.81[EUR][1000 genomes]
rs17154180	0.81[EUR][1000 genomes]
rs17154195	0.81[EUR][1000 genomes]
rs17154200	0.81[EUR][1000 genomes]
rs17154222	0.81[EUR][1000 genomes]
rs17508845	1.00[CEU][hapmap]
rs17510841	1.00[CEU][hapmap]
rs17511545	1.00[CEU][hapmap]
rs17511686	1.00[CEU][hapmap]
rs17593682	1.00[CEU][hapmap]
rs17593836	1.00[CEU][hapmap]
rs17594827	0.83[EUR][1000 genomes]
rs17596359	1.00[CEU][hapmap]
rs17596862	1.00[CEU][hapmap]
rs17597065	1.00[CEU][hapmap]
rs17597092	1.00[CEU][hapmap]
rs2186597	0.81[EUR][1000 genomes]
rs2447309	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2447310	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2508335	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2508339	0.84[AMR][1000 genomes]
rs2509274	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2509275	0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2509276	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2509279	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2509290	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2509730	0.81[EUR][1000 genomes]
rs2927182	0.82[AMR][1000 genomes]
rs2927183	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2927184	0.84[AMR][1000 genomes]
rs2957223	0.93[AMR][1000 genomes]
rs2957227	0.84[AMR][1000 genomes]
rs3110321	0.89[AMR][1000 genomes]
rs3110322	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3132748	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3781792	0.81[EUR][1000 genomes]
rs3781793	0.81[EUR][1000 genomes]
rs3862660	0.81[EUR][1000 genomes]
rs41384548	0.81[EUR][1000 genomes]
rs4301803	0.81[EUR][1000 genomes]
rs4393334	0.81[EUR][1000 genomes]
rs4515985	0.81[EUR][1000 genomes]
rs471369	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs472177	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs473087	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs473679	0.84[AMR][1000 genomes]
rs473979	0.84[AMR][1000 genomes]
rs474844	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs475145	0.84[AMR][1000 genomes]
rs475706	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs475800	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs477577	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs477729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs478167	0.81[EUR][1000 genomes]
rs478924	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs479264	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs481893	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs482355	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs482356	0.81[EUR][1000 genomes]
rs484030	0.82[AMR][1000 genomes]
rs484814	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs484895	0.81[EUR][1000 genomes]
rs485008	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs485803	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs486587	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs487312	0.84[AMR][1000 genomes]
rs492652	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs493025	0.84[AMR][1000 genomes]
rs494110	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs496938	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs497596	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs498099	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs498165	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs498299	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs498388	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs499054	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs501288	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs504016	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs504320	0.84[AMR][1000 genomes]
rs506384	0.84[AMR][1000 genomes]
rs507235	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs508411	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs510122	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs511263	0.84[AMR][1000 genomes]
rs511785	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs511957	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs512194	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs512690	0.84[AMR][1000 genomes]
rs512695	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs513979	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs516912	0.81[EUR][1000 genomes]
rs519605	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs521330	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs523016	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs524102	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs526672	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528525	0.81[EUR][1000 genomes]
rs529270	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs532293	0.84[AMR][1000 genomes]
rs533166	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs536544	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs537595	0.84[AMR][1000 genomes]
rs537625	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs538169	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs540684	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs540989	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs549086	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs550189	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs550449	0.84[AMR][1000 genomes]
rs552601	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs554149	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs554460	0.84[AMR][1000 genomes]
rs554848	0.81[EUR][1000 genomes]
rs555175	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs555251	0.84[AMR][1000 genomes]
rs558569	0.84[AMR][1000 genomes]
rs561029	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs562657	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs563267	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs563800	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs565026	0.84[AMR][1000 genomes]
rs565983	0.81[EUR][1000 genomes]
rs567253	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs567485	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs567603	0.81[EUR][1000 genomes]
rs569326	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs571451	0.84[AMR][1000 genomes]
rs573592	0.81[EUR][1000 genomes]
rs57529518	0.81[EUR][1000 genomes]
rs577224	0.84[AMR][1000 genomes]
rs577644	0.84[AMR][1000 genomes]
rs57871852	0.81[EUR][1000 genomes]
rs579192	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs579373	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs580242	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs581265	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58169611	0.81[EUR][1000 genomes]
rs58775794	0.81[EUR][1000 genomes]
rs60009036	0.81[EUR][1000 genomes]
rs60094706	0.81[EUR][1000 genomes]
rs61636608	0.81[EUR][1000 genomes]
rs7112355	1.00[CEU][hapmap]
rs7114773	0.81[EUR][1000 genomes]
rs7119530	1.00[CEU][hapmap]
rs7119778	0.81[EUR][1000 genomes]
rs7126593	0.81[EUR][1000 genomes]
rs7131059	0.81[EUR][1000 genomes]
rs73486988	0.81[EUR][1000 genomes]
rs73486997	0.81[EUR][1000 genomes]
rs7929816	1.00[CEU][hapmap]
rs7941643	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7946152	0.81[EUR][1000 genomes]
rs7947036	0.81[EUR][1000 genomes]
rs7947514	0.81[EUR][1000 genomes]
rs7948041	1.00[CEU][hapmap]
rs7952024	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752406	chr11:59490424-59529524	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59495200-59499000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:59496800-59498800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:59497600-59499000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr11:59497800-59500400	Enhancers	Fetal Intestine Large	intestine
5	chr11:59497800-59500800	Enhancers	Fetal Intestine Small	intestine
6	chr11:59498000-59499400	Enhancers	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links