Variant report

Variant	rs498165
Chromosome Location	chr11:59498682-59498683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs1151063	0.84[AMR][1000 genomes]
rs1151064	0.80[AMR][1000 genomes]
rs11820340	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12270043	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12275314	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12276956	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12280446	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12282618	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1287111	0.84[AMR][1000 genomes]
rs1290457	0.81[ASN][1000 genomes]
rs1290460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17154025	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17154142	1.00[EUR][1000 genomes]
rs17154205	1.00[EUR][1000 genomes]
rs17154216	1.00[EUR][1000 genomes]
rs17154220	1.00[EUR][1000 genomes]
rs2298589	1.00[EUR][1000 genomes]
rs2447309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2447310	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2508335	0.80[AMR][1000 genomes]
rs2508339	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2509274	0.80[AMR][1000 genomes]
rs2509275	0.80[AMR][1000 genomes]
rs2509279	0.82[AMR][1000 genomes]
rs2927183	0.80[AMR][1000 genomes]
rs2927184	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2957223	0.86[AMR][1000 genomes]
rs2957227	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3110321	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs471369	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs472152	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs473087	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs473679	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs473912	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs473979	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs475145	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs475706	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs477577	0.84[AMR][1000 genomes]
rs477729	0.84[AMR][1000 genomes]
rs478924	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs479264	0.80[AMR][1000 genomes]
rs481893	0.82[AMR][1000 genomes]
rs484814	0.80[AMR][1000 genomes]
rs485803	0.84[AMR][1000 genomes]
rs486587	0.80[AMR][1000 genomes]
rs487312	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs492652	0.81[ASN][1000 genomes]
rs493025	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs494110	0.84[AMR][1000 genomes]
rs496492	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs496938	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs497596	0.82[AMR][1000 genomes]
rs498099	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs498299	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs499037	0.84[AMR][1000 genomes]
rs499054	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs501288	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs504016	0.84[AMR][1000 genomes]
rs504320	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs506384	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs507235	0.80[AMR][1000 genomes]
rs508411	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs510122	0.80[AMR][1000 genomes]
rs511263	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs511785	0.80[AMR][1000 genomes]
rs511957	0.81[ASN][1000 genomes]
rs512690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs513979	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs519605	0.80[AMR][1000 genomes]
rs520622	0.95[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs522957	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs523932	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs524102	0.84[AMR][1000 genomes]
rs526672	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs529270	0.80[AMR][1000 genomes]
rs532293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs533166	0.82[AMR][1000 genomes]
rs536544	0.82[AMR][1000 genomes]
rs537595	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs537625	0.84[AMR][1000 genomes]
rs538169	0.82[AMR][1000 genomes]
rs540989	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs548163	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs549086	0.80[AMR][1000 genomes]
rs550189	0.82[AMR][1000 genomes]
rs550449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs552601	0.82[AMR][1000 genomes]
rs554460	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs555175	0.80[AMR][1000 genomes]
rs555251	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs558569	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs559192	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs561029	0.80[AMR][1000 genomes]
rs562076	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs562657	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs563267	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs563800	0.80[AMR][1000 genomes]
rs565026	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs567253	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567485	0.80[AMR][1000 genomes]
rs569326	0.80[AMR][1000 genomes]
rs571451	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs572138	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs577224	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs577644	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59057725	1.00[EUR][1000 genomes]
rs60146927	1.00[EUR][1000 genomes]
rs60628632	1.00[EUR][1000 genomes]
rs60659006	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61370741	1.00[EUR][1000 genomes]
rs73488820	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73488834	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7927187	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7937245	1.00[EUR][1000 genomes]
rs7937684	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752406	chr11:59490424-59529524	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59495200-59499000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:59496800-59498800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:59497600-59499000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr11:59497800-59500400	Enhancers	Fetal Intestine Large	intestine
5	chr11:59497800-59500800	Enhancers	Fetal Intestine Small	intestine
6	chr11:59498000-59499400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr11:59498400-59499000	Enhancers	HepG2	liver
8	chr11:59498600-59498800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:59498600-59502800	Weak transcription	Fetal Kidney	kidney

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