Variant report

Variant	rs499037
Chromosome Location	chr11:59480952-59480953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59479954..59482315-chr11:59521677..59523287,2	K562	blood:
2	chr11:59480505..59482058-chr11:59521372..59523220,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254477	Chromatin interaction
ENSG00000166900	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12282741	1.00[CEU][hapmap]
rs1290460	0.84[AMR][1000 genomes]
rs1530995	1.00[ASW][hapmap];0.83[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap]
rs17153962	1.00[ASW][hapmap];0.83[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap]
rs17153982	0.89[YRI][hapmap]
rs17154025	0.89[YRI][hapmap];0.84[AMR][1000 genomes]
rs2447309	0.84[AMR][1000 genomes]
rs2508339	0.84[AMR][1000 genomes]
rs2927184	0.84[AMR][1000 genomes]
rs2957227	0.84[AMR][1000 genomes]
rs3110321	0.80[AMR][1000 genomes]
rs41340150	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.80[YRI][hapmap]
rs473679	0.84[AMR][1000 genomes]
rs473979	0.84[AMR][1000 genomes]
rs475145	0.82[JPT][hapmap];0.86[YRI][hapmap];0.84[AMR][1000 genomes]
rs478924	0.84[AMR][1000 genomes]
rs484083	0.82[AMR][1000 genomes]
rs486952	1.00[ASW][hapmap];0.83[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap]
rs487312	0.84[AMR][1000 genomes]
rs493025	0.84[AMR][1000 genomes]
rs498165	0.84[AMR][1000 genomes]
rs501288	0.84[AMR][1000 genomes]
rs504320	0.84[AMR][1000 genomes]
rs506384	0.84[ASW][hapmap];1.00[CHD][hapmap];0.88[LWK][hapmap];0.83[MKK][hapmap];0.84[AMR][1000 genomes]
rs508411	0.81[YRI][hapmap];0.84[AMR][1000 genomes]
rs511263	0.84[AMR][1000 genomes]
rs512194	1.00[CHB][hapmap]
rs512690	0.84[AMR][1000 genomes]
rs518026	0.89[YRI][hapmap]
rs520622	0.80[AMR][1000 genomes]
rs532293	0.84[AMR][1000 genomes]
rs537595	1.00[CHD][hapmap]
rs550449	0.84[AMR][1000 genomes]
rs554460	0.84[AMR][1000 genomes]
rs555251	0.84[ASW][hapmap];1.00[CHD][hapmap];0.96[LWK][hapmap];0.89[MKK][hapmap];0.84[AMR][1000 genomes]
rs558569	0.84[AMR][1000 genomes]
rs559150	1.00[ASW][hapmap];0.83[CHD][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap]
rs562076	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs565026	0.84[AMR][1000 genomes]
rs567253	0.84[AMR][1000 genomes]
rs571451	0.84[AMR][1000 genomes]
rs577224	0.80[YRI][hapmap];0.84[AMR][1000 genomes]
rs7952495	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517878	chr11:59441271-59480969	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59475400-59483200	Weak transcription	K562	blood
2	chr11:59478000-59482200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:59478200-59489600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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