Variant report

Variant	rs558505
Chromosome Location	chr11:59340185-59340186
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59340120..59342655-chr11:59345201..59347247,2	K562	blood:
2	chr11:59338335..59341054-chr11:59523391..59525087,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12276505	1.00[CHB][hapmap]
rs12278910	1.00[CHB][hapmap]
rs12289921	1.00[CHB][hapmap]
rs12797334	1.00[CHB][hapmap]
rs1287449	0.86[AMR][1000 genomes]
rs1299800	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs1530995	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17153910	1.00[CHB][hapmap]
rs17153962	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17153966	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17153982	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17154025	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2298868	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2298869	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924491	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924493	0.91[ASN][1000 genomes]
rs2927184	1.00[JPT][hapmap];0.86[YRI][hapmap]
rs35770960	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41340150	1.00[JPT][hapmap];0.89[YRI][hapmap]
rs473490	1.00[CHB][hapmap]
rs473979	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs475145	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs486952	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs488331	1.00[CHB][hapmap]
rs4939293	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs495564	1.00[CHB][hapmap]
rs499037	0.90[YRI][hapmap]
rs506384	1.00[JPT][hapmap]
rs508411	1.00[JPT][hapmap];0.91[YRI][hapmap]
rs518026	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs519535	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs520622	1.00[JPT][hapmap]
rs536910	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs537595	1.00[JPT][hapmap]
rs553700	1.00[CHB][hapmap]
rs555251	1.00[JPT][hapmap];0.82[YRI][hapmap]
rs559150	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs563683	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs565482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs567994	1.00[CHB][hapmap]
rs577224	1.00[JPT][hapmap];0.91[YRI][hapmap]
rs579362	1.00[CHB][hapmap]
rs6591541	1.00[CHB][hapmap]
rs693110	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7116567	1.00[CHB][hapmap]
rs7124813	1.00[CHB][hapmap]
rs7939527	1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952495	1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8280	1.00[CHB][hapmap]

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59333800-59340600	Weak transcription	HMEC	breast
2	chr11:59333800-59341000	Weak transcription	Liver	Liver
3	chr11:59333800-59341600	Weak transcription	Lung	lung
4	chr11:59333800-59342200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:59333800-59342200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:59333800-59342200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:59333800-59342400	Weak transcription	Gastric	stomach
8	chr11:59333800-59342400	Weak transcription	Pancreas	Pancrea
9	chr11:59333800-59342400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:59333800-59342400	Weak transcription	Small Intestine	intestine
11	chr11:59333800-59342600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr11:59333800-59342600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:59333800-59343000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:59333800-59343000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:59333800-59343000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr11:59333800-59343000	Weak transcription	Fetal Brain Male	brain
17	chr11:59333800-59343000	Weak transcription	Spleen	Spleen
18	chr11:59333800-59343200	Weak transcription	Aorta	Aorta
19	chr11:59333800-59343200	Weak transcription	Brain Angular Gyrus	brain
20	chr11:59333800-59343200	Weak transcription	Brain Hippocampus Middle	brain
21	chr11:59333800-59343200	Weak transcription	Esophagus	oesophagus
22	chr11:59333800-59343400	Weak transcription	Brain Substantia Nigra	brain
23	chr11:59333800-59343400	Weak transcription	Colonic Mucosa	Colon
24	chr11:59333800-59343400	Weak transcription	Stomach Mucosa	stomach
25	chr11:59333800-59344400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr11:59333800-59351800	Weak transcription	Fetal Heart	heart
27	chr11:59334000-59340600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr11:59334000-59340800	Weak transcription	Brain Germinal Matrix	brain
29	chr11:59334000-59340800	Weak transcription	Fetal Thymus	thymus
30	chr11:59334000-59341000	Weak transcription	Primary T cells from cord blood	blood
31	chr11:59334000-59341000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr11:59334000-59341000	Weak transcription	Fetal Intestine Small	intestine
33	chr11:59334000-59341000	Weak transcription	Fetal Stomach	stomach
34	chr11:59334000-59341400	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:59334000-59341600	Weak transcription	Primary B cells from peripheral blood	blood
36	chr11:59334000-59341600	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr11:59334000-59342000	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr11:59334000-59342000	Weak transcription	Primary B cells from cord blood	blood
39	chr11:59334000-59342200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr11:59334000-59342200	Weak transcription	Fetal Muscle Leg	muscle
41	chr11:59334000-59342200	Weak transcription	Left Ventricle	heart
42	chr11:59334000-59342400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr11:59334000-59342400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr11:59334000-59342400	Weak transcription	Duodenum Mucosa	Duodenum
45	chr11:59334000-59342400	Weak transcription	Fetal Lung	lung
46	chr11:59334000-59342400	Weak transcription	Stomach Smooth Muscle	stomach
47	chr11:59334000-59342600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr11:59334000-59343000	Weak transcription	Primary hematopoietic stem cells	blood
49	chr11:59334000-59343000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr11:59334000-59343000	Weak transcription	Psoas Muscle	Psoas

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