Variant report

Variant	rs7948635
Chromosome Location	chr11:59319717-59319718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:59316767..59319873-chr11:59382197..59385318,7	K562	blood:
2	chr11:59318868..59320523-chr11:59367905..59369688,2	K562	blood:
3	chr11:57433763..57436720-chr11:59318054..59319755,2	K562	blood:
4	chr11:59318069..59320155-chr11:59327909..59330794,2	MCF-7	breast:
5	chr10:71905989..71906738-chr11:59319055..59319881,2	Hela-S3	cervix:
6	chr11:59313248..59321957-chr11:59433786..59439304,14	K562	blood:
7	chr11:59191985..59194660-chr11:59317769..59320610,2	K562	blood:
8	chr11:59316022..59320614-chr11:59433786..59439120,8	K562	blood:
9	chr11:59317031..59320121-chr11:59331388..59333967,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000255355	Chromatin interaction
ENSG00000255139	Chromatin interaction
ENSG00000156599	Chromatin interaction
ENSG00000156521	Chromatin interaction
ENSG00000255008	Chromatin interaction
ENSG00000110048	Chromatin interaction
ENSG00000166889	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11230019	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230036	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271110	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272999	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274820	1.00[ASN][1000 genomes]
rs12276505	0.81[EUR][1000 genomes]
rs12287696	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291415	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154005	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154053	0.86[EUR][1000 genomes]
rs17508845	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17509520	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17510841	0.81[EUR][1000 genomes]
rs17592880	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17593682	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17593836	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17594827	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57397608	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591540	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101580	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107183	1.00[ASN][1000 genomes]
rs7112355	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7118051	1.00[ASN][1000 genomes]
rs7130130	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924849	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929816	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952380	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs997788	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59316200-59320400	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr11:59316200-59320400	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr11:59316400-59320200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:59316400-59320400	Active TSS	H1 Cell Line	embryonic stem cell
5	chr11:59316400-59320400	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr11:59316400-59320600	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr11:59316400-59321200	Active TSS	H9 Cell Line	embryonic stem cell
8	chr11:59316600-59319800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr11:59316600-59319800	Active TSS	Brain Angular Gyrus	brain
10	chr11:59316600-59320200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:59316600-59320200	Active TSS	HSMM	muscle
12	chr11:59316600-59320400	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr11:59316800-59319800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:59316800-59319800	Active TSS	Brain Anterior Caudate	brain
15	chr11:59316800-59319800	Active TSS	Brain Hippocampus Middle	brain
16	chr11:59316800-59320000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:59316800-59320000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:59316800-59320000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:59316800-59320200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:59316800-59320200	Active TSS	Fetal Kidney	kidney
21	chr11:59316800-59320600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:59317000-59319800	Active TSS	Fetal Intestine Small	intestine
23	chr11:59317000-59319800	Active TSS	Right Ventricle	heart
24	chr11:59317000-59320000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:59317000-59320000	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr11:59317000-59320000	Active TSS	Fetal Lung	lung
27	chr11:59317000-59320000	Active TSS	Fetal Muscle Leg	muscle
28	chr11:59317000-59320200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:59317000-59320200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:59317000-59320400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:59317000-59320400	Active TSS	Ovary	ovary
32	chr11:59317200-59319800	Active TSS	Fetal Intestine Large	intestine
33	chr11:59317200-59319800	Active TSS	Right Atrium	heart
34	chr11:59317200-59319800	Active TSS	Stomach Smooth Muscle	stomach
35	chr11:59317200-59320000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:59317200-59320000	Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr11:59317200-59320000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:59317200-59320000	Active TSS	Fetal Stomach	stomach
39	chr11:59317200-59320000	Active TSS	HMEC	breast
40	chr11:59317200-59320000	Active TSS	NHDF-Ad	bronchial
41	chr11:59317200-59320200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr11:59317200-59320200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:59317200-59320200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr11:59317200-59320200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:59317200-59320200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:59317200-59320400	Active TSS	A549	lung
47	chr11:59317200-59320600	Active TSS	HUES48 Cell Line	embryonic stem cell
48	chr11:59317200-59320600	Active TSS	iPS-18 Cell Line	embryonic stem cell
49	chr11:59317400-59319800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr11:59317400-59319800	Active TSS	Cortex derived primary cultured neurospheres	brain

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