Variant report

Variant	rs17592880
Chromosome Location	chr11:59286521-59286522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11230019	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230036	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12271110	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272999	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274820	1.00[ASN][1000 genomes]
rs12276505	1.00[CEU][hapmap]
rs12287696	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12291415	1.00[ASN][1000 genomes]
rs17154005	1.00[ASN][1000 genomes]
rs17508845	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17509520	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17593682	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17593836	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17594827	0.83[AMR][1000 genomes]
rs57397608	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591540	1.00[ASN][1000 genomes]
rs7101580	1.00[ASN][1000 genomes]
rs7107183	1.00[ASN][1000 genomes]
rs7112355	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7118051	1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130130	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924849	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929816	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7948041	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948635	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952380	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs997788	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59279800-59287400	Weak transcription	Primary T cells from cord blood	blood

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