Variant report

Variant	rs7117032
Chromosome Location	chr11:59441271-59441272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr11:59441262-59441316	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59382734..59385576-chr11:59440781..59442919,2	K562	blood:

Variant related genes	Relation type
PATL1	TF binding region
ENSG00000255355	TF binding region
ENSG00000255139	Chromatin interaction
ENSG00000110048	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11230007	1.00[AMR][1000 genomes]
rs12275697	0.86[ASW][hapmap];1.00[MEX][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs12275857	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275939	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs12276264	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279069	0.86[ASW][hapmap];1.00[MEX][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs12280801	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12281446	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs12282534	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs12282585	0.86[ASW][hapmap];1.00[MEX][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs12283245	1.00[AMR][1000 genomes]
rs12285516	1.00[AMR][1000 genomes]
rs12287360	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288523	0.84[ASW][hapmap]
rs12291105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12292726	1.00[AMR][1000 genomes]
rs17154234	1.00[MEX][hapmap]
rs2228289	1.00[AMR][1000 genomes]
rs55861319	1.00[AMR][1000 genomes]
rs55924869	1.00[AMR][1000 genomes]
rs56198198	1.00[AMR][1000 genomes]
rs57004175	1.00[AMR][1000 genomes]
rs57174205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58462134	1.00[AMR][1000 genomes]
rs60249922	1.00[AMR][1000 genomes]
rs7129130	0.84[ASW][hapmap]
rs73484843	1.00[AMR][1000 genomes]
rs73484845	1.00[AMR][1000 genomes]
rs73484869	1.00[AMR][1000 genomes]
rs73484887	1.00[AMR][1000 genomes]
rs73486954	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488817	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488858	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949552	0.86[ASW][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802782	chr11:59383323-59448068	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv517878	chr11:59441271-59480969	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59438600-59441600	Weak transcription	Fetal Intestine Small	intestine
2	chr11:59440000-59442000	Enhancers	Liver	Liver
3	chr11:59440800-59441800	Weak transcription	HepG2	liver

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