Variant report

Variant	rs55924869
Chromosome Location	chr11:59403045-59403046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59383150..59385073-chr11:59402691..59405438,2	K562	blood:
2	chr11:59402868..59405539-chr11:59417059..59419661,2	K562	blood:
3	chr11:59382533..59384245-chr11:59402402..59404626,2	K562	blood:
4	chr11:59396061..59398307-chr11:59402162..59404297,2	K562	blood:
5	chr11:59399439..59404169-chr11:59432679..59437637,5	K562	blood:
6	chr11:59402868..59406000-chr11:59417059..59419822,3	K562	blood:

Variant related genes	Relation type
ENSG00000110048	Chromatin interaction
ENSG00000255139	Chromatin interaction
ENSG00000166889	Chromatin interaction
ENSG00000255355	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11230007	1.00[AMR][1000 genomes]
rs12275697	1.00[AMR][1000 genomes]
rs12275857	1.00[AMR][1000 genomes]
rs12275939	1.00[AMR][1000 genomes]
rs12276264	1.00[AMR][1000 genomes]
rs12279069	1.00[AMR][1000 genomes]
rs12280801	1.00[AMR][1000 genomes]
rs12281446	1.00[AMR][1000 genomes]
rs12282534	1.00[AMR][1000 genomes]
rs12282585	1.00[AMR][1000 genomes]
rs12283245	1.00[AMR][1000 genomes]
rs12285516	1.00[AMR][1000 genomes]
rs12287360	1.00[AMR][1000 genomes]
rs12291105	1.00[AMR][1000 genomes]
rs12292726	1.00[AMR][1000 genomes]
rs2228289	1.00[AMR][1000 genomes]
rs55861319	1.00[AMR][1000 genomes]
rs56198198	1.00[AMR][1000 genomes]
rs57004175	1.00[AMR][1000 genomes]
rs57174205	1.00[AMR][1000 genomes]
rs58462134	1.00[AMR][1000 genomes]
rs60249922	1.00[AMR][1000 genomes]
rs7117032	1.00[AMR][1000 genomes]
rs73484843	1.00[AMR][1000 genomes]
rs73484845	1.00[AMR][1000 genomes]
rs73484869	1.00[AMR][1000 genomes]
rs73484887	1.00[AMR][1000 genomes]
rs73486954	1.00[AMR][1000 genomes]
rs73486999	1.00[AMR][1000 genomes]
rs73488817	1.00[AMR][1000 genomes]
rs73488858	1.00[AMR][1000 genomes]
rs7949552	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797571	chr11:59383323-59424688	Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv1797737	chr11:59383323-59424688	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1802782	chr11:59383323-59448068	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv832172	chr11:59396407-59431115	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59384400-59404400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:59384800-59404600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:59384800-59404800	Weak transcription	Brain Angular Gyrus	brain
4	chr11:59385000-59404400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:59385000-59404800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:59385400-59404200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:59392400-59403600	Weak transcription	NHDF-Ad	bronchial
8	chr11:59392800-59403200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:59393200-59404200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr11:59393400-59403400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:59393600-59403200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:59393600-59403400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:59393600-59403600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:59393600-59404200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:59393600-59408200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:59393800-59403400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr11:59393800-59404200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr11:59394200-59403200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr11:59394600-59403200	Weak transcription	Left Ventricle	heart
20	chr11:59394600-59404800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:59395000-59404000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr11:59395200-59403200	Weak transcription	Aorta	Aorta
23	chr11:59395200-59404400	Weak transcription	Fetal Lung	lung
24	chr11:59395600-59403800	Weak transcription	Fetal Kidney	kidney
25	chr11:59395600-59409800	Weak transcription	Fetal Heart	heart
26	chr11:59395600-59434600	Weak transcription	Stomach Mucosa	stomach
27	chr11:59397000-59404200	Weak transcription	NH-A	brain
28	chr11:59397200-59403400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr11:59397200-59405000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr11:59397400-59403200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:59397400-59404400	Weak transcription	Brain Substantia Nigra	brain
32	chr11:59397600-59404200	Weak transcription	HepG2	liver
33	chr11:59397600-59404600	Weak transcription	Gastric	stomach
34	chr11:59398000-59404400	Weak transcription	Fetal Brain Female	brain
35	chr11:59398200-59403400	Weak transcription	Osteobl	bone
36	chr11:59399200-59403800	Weak transcription	HMEC	breast
37	chr11:59399600-59403800	Weak transcription	K562	blood
38	chr11:59400800-59404400	Weak transcription	NHLF	lung
39	chr11:59401000-59403800	Weak transcription	Brain Anterior Caudate	brain
40	chr11:59401000-59404400	Weak transcription	Rectal Smooth Muscle	rectum
41	chr11:59401200-59403200	Weak transcription	Pancreas	Pancrea
42	chr11:59401200-59404400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr11:59401200-59404600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr11:59401400-59403200	Weak transcription	Colonic Mucosa	Colon
45	chr11:59401400-59404800	Weak transcription	Fetal Brain Male	brain
46	chr11:59401600-59403200	Weak transcription	Right Ventricle	heart
47	chr11:59401600-59404600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr11:59401800-59403600	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr11:59402000-59403800	Weak transcription	Brain Germinal Matrix	brain
50	chr11:59402000-59407400	Strong transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links