Variant report

Variant	rs12287360
Chromosome Location	chr11:59466179-59466180
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11230007	1.00[AMR][1000 genomes]
rs12275697	1.00[AMR][1000 genomes]
rs12275857	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275939	1.00[AMR][1000 genomes]
rs12276264	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279069	1.00[AMR][1000 genomes]
rs12280801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12281446	1.00[AMR][1000 genomes]
rs12282534	1.00[AMR][1000 genomes]
rs12282585	1.00[AMR][1000 genomes]
rs12283245	1.00[AMR][1000 genomes]
rs12285516	1.00[AMR][1000 genomes]
rs12291105	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12292726	1.00[AMR][1000 genomes]
rs2228289	1.00[AMR][1000 genomes]
rs55861319	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55924869	1.00[AMR][1000 genomes]
rs56198198	1.00[AMR][1000 genomes]
rs57004175	1.00[AMR][1000 genomes]
rs57174205	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58462134	1.00[AMR][1000 genomes]
rs60249922	1.00[AMR][1000 genomes]
rs7117032	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484843	1.00[AMR][1000 genomes]
rs73484845	1.00[AMR][1000 genomes]
rs73484869	1.00[AMR][1000 genomes]
rs73484887	1.00[AMR][1000 genomes]
rs73486954	1.00[AMR][1000 genomes]
rs73486999	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488817	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949552	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517878	chr11:59441271-59480969	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59460400-59473400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:59464600-59466400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr11:59464800-59466600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:59465600-59466400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:59465800-59466400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links