Variant report

Variant	rs12282585
Chromosome Location	chr11:59348380-59348381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59347129..59350032-chr11:59435288..59436881,2	K562	blood:
2	chr11:59340794..59342627-chr11:59347841..59349634,2	K562	blood:

Variant related genes	Relation type
ENSG00000166889	Chromatin interaction
ENSG00000255355	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11230007	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275697	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275857	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs12275939	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12276264	0.86[ASW][hapmap];1.00[MEX][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs12279069	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12280801	1.00[AMR][1000 genomes]
rs12281446	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282534	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283245	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285516	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287360	1.00[AMR][1000 genomes]
rs12291105	1.00[AMR][1000 genomes]
rs12292726	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2228289	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55861319	1.00[AMR][1000 genomes]
rs55924869	1.00[AMR][1000 genomes]
rs56198198	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57004175	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57174205	1.00[AMR][1000 genomes]
rs58462134	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60249922	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7117032	0.86[ASW][hapmap];1.00[MEX][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs73484843	1.00[AMR][1000 genomes]
rs73484845	1.00[AMR][1000 genomes]
rs73484869	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484872	0.98[AFR][1000 genomes]
rs73484887	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486954	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73486999	1.00[AMR][1000 genomes]
rs73488817	1.00[AMR][1000 genomes]
rs73488858	1.00[AMR][1000 genomes]
rs7949552	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59333800-59351800	Weak transcription	Fetal Heart	heart
2	chr11:59334200-59366200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:59334200-59382000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:59340600-59350400	Strong transcription	Fetal Muscle Trunk	muscle
5	chr11:59340800-59351000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:59340800-59351000	Strong transcription	Fetal Brain Female	brain
7	chr11:59340800-59378200	Strong transcription	Fetal Thymus	thymus
8	chr11:59341000-59350200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr11:59341000-59350400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:59341000-59350400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:59341000-59350400	Strong transcription	GM12878-XiMat	blood
12	chr11:59341000-59351800	Strong transcription	Liver	Liver
13	chr11:59341200-59350200	Strong transcription	Thymus	Thymus
14	chr11:59341400-59350600	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr11:59341400-59351800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr11:59341400-59351800	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr11:59341400-59352000	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr11:59341600-59350200	Strong transcription	Lung	lung
19	chr11:59341600-59350400	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr11:59341600-59350400	Strong transcription	K562	blood
21	chr11:59341600-59351800	Strong transcription	Primary B cells from peripheral blood	blood
22	chr11:59342000-59349000	Strong transcription	Brain Germinal Matrix	brain
23	chr11:59342000-59349600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr11:59342000-59350000	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr11:59342000-59350000	Strong transcription	Skeletal Muscle Male	skeletal muscle
26	chr11:59342000-59350400	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr11:59342000-59350400	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr11:59342000-59352000	Strong transcription	Dnd41	blood
29	chr11:59342000-59352400	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr11:59342000-59352400	Strong transcription	Hela-S3	cervix
31	chr11:59342000-59352600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr11:59342000-59379000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:59342200-59348600	Strong transcription	Brain Inferior Temporal Lobe	brain
34	chr11:59342200-59349000	Strong transcription	HMEC	breast
35	chr11:59342200-59349200	Strong transcription	Brain Anterior Caudate	brain
36	chr11:59342200-59350200	Strong transcription	Left Ventricle	heart
37	chr11:59342200-59350400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr11:59342200-59350400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr11:59342200-59350600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:59342200-59350600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr11:59342200-59351800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr11:59342200-59352400	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr11:59342200-59358000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:59342200-59378200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr11:59342400-59349000	Strong transcription	Placenta Amnion	Placenta Amnion
46	chr11:59342400-59349400	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr11:59342400-59349400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:59342400-59350400	Strong transcription	Duodenum Mucosa	Duodenum
49	chr11:59342400-59350400	Strong transcription	Fetal Lung	lung
50	chr11:59342400-59350600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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