The 2.0 version of rSNPBase

Variant report

Variant rs12275939
Chromosome Location chr11:59327326-59327327
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:59319000-59327800 Weak transcription Stomach Mucosa stomach
2 chr11:59322800-59329000 Active TSS ES-I3 Cell Line embryonic stem cell
3 chr11:59323600-59327800 Weak transcription Lung lung
4 chr11:59323600-59329000 Active TSS Brain Anterior Caudate brain
5 chr11:59323800-59327600 Weak transcription Aorta Aorta
6 chr11:59323800-59327600 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr11:59323800-59327800 Weak transcription Colonic Mucosa Colon
8 chr11:59324000-59327400 Weak transcription Colon Smooth Muscle Colon
9 chr11:59324000-59327800 Weak transcription Psoas Muscle Psoas
10 chr11:59324200-59327800 Weak transcription Ovary ovary
11 chr11:59324600-59327800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr11:59324600-59327800 Weak transcription Pancreas Pancrea
13 chr11:59324600-59328000 Weak transcription Small Intestine intestine
14 chr11:59325000-59327400 Weak transcription Primary T killer naive cells fromperipheralblood blood
15 chr11:59325000-59327400 Weak transcription Brain Angular Gyrus brain
16 chr11:59325000-59327400 Weak transcription Right Atrium heart
17 chr11:59325000-59327400 Weak transcription Spleen Spleen
18 chr11:59325000-59327600 Enhancers Primary B cells from peripheral blood blood
19 chr11:59325000-59327600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
20 chr11:59325000-59327600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
21 chr11:59325000-59327600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
22 chr11:59325000-59327600 Weak transcription Primary T killer memory cells from peripheral blood blood
23 chr11:59325000-59327600 Weak transcription Stomach Smooth Muscle stomach
24 chr11:59325000-59327800 Weak transcription HSMM muscle
25 chr11:59325000-59327800 Weak transcription HSMMtube muscle
26 chr11:59325000-59327800 Weak transcription NHEK skin
27 chr11:59325200-59327400 Weak transcription Brain Inferior Temporal Lobe brain
28 chr11:59325400-59327400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
29 chr11:59325400-59327400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr11:59325400-59327400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
31 chr11:59325400-59327400 Bivalent Enhancer Fetal Thymus thymus
32 chr11:59325400-59327800 Weak transcription Primary T helper naive cells fromperipheralblood blood
33 chr11:59325400-59327800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
34 chr11:59325600-59327400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr11:59325600-59327400 Weak transcription Primary T helper naive cells from peripheral blood blood
36 chr11:59325600-59327400 Weak transcription Osteobl bone
37 chr11:59325600-59327600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr11:59325600-59327600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
39 chr11:59325600-59327600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr11:59325600-59327600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr11:59325600-59327600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr11:59325600-59327600 Weak transcription Muscle Satellite Cultured Cells --
43 chr11:59325600-59327600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
44 chr11:59325600-59327600 Enhancers Placenta Placenta
45 chr11:59325600-59327600 Weak transcription Rectal Mucosa Donor 29 rectum
46 chr11:59325600-59327600 Weak transcription Skeletal Muscle Male skeletal muscle
47 chr11:59325600-59327800 Weak transcription NHDF-Ad bronchial
48 chr11:59325600-59327800 Weak transcription NHLF lung
49 chr11:59325800-59327400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr11:59325800-59327400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015