Variant report

Variant	rs2100403
Chromosome Location	chr11:59193141-59193142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1026319	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10792241	0.90[AFR][1000 genomes]
rs1377558	0.93[AFR][1000 genomes]
rs1453543	0.87[AFR][1000 genomes]
rs1453545	0.87[AFR][1000 genomes]
rs1453553	0.92[AFR][1000 genomes]
rs2198452	0.82[AFR][1000 genomes]
rs7120664	0.93[AFR][1000 genomes]
rs9988824	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1047952	chr11:59124719-59221606	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59191600-59194600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:59192200-59193600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr11:59192400-59193600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr11:59192400-59194000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:59192400-59194800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr11:59192600-59193200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:59192600-59193600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:59192600-59193600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:59192600-59193600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr11:59192800-59193600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:59192800-59194600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:59192800-59194800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr11:59193000-59193800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:59193000-59193800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr11:59193000-59194200	Enhancers	Brain Germinal Matrix	brain
16	chr11:59193000-59194800	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links