Variant report

Variant	rs10750920
Chromosome Location	chr11:59162571-59162572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10736693	0.81[AMR][1000 genomes]
rs10736698	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10750914	0.81[AMR][1000 genomes]
rs10792241	0.83[ASN][1000 genomes]
rs1357375	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1377558	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1453543	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1453545	0.83[ASN][1000 genomes]
rs1453553	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1522755	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1597989	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs1608214	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs17153732	1.00[CHB][hapmap]
rs17153766	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1829806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1949710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027773	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2187530	0.81[AMR][1000 genomes]
rs2198452	1.00[CHB][hapmap]
rs2213079	0.81[AMR][1000 genomes]
rs2213080	0.81[AMR][1000 genomes]
rs2213082	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2219071	1.00[CHB][hapmap];0.83[YRI][hapmap]
rs4438055	0.81[AMR][1000 genomes]
rs4479010	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4494319	0.81[AMR][1000 genomes]
rs4556553	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6591519	0.81[AMR][1000 genomes]
rs7120664	0.83[ASN][1000 genomes]
rs7927986	0.81[AMR][1000 genomes]
rs940022	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv541052	chr11:59119390-59185103	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1039690	chr11:59124719-59178832	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1047952	chr11:59124719-59221606	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59162200-59162800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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