Variant report

Variant	rs4556553
Chromosome Location	chr11:59118914-59118915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10437722	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10736693	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10736698	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10750913	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10750914	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10750920	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10792229	1.00[EUR][1000 genomes]
rs10896959	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11229909	1.00[EUR][1000 genomes]
rs1357375	0.90[AMR][1000 genomes]
rs1453543	1.00[CHD][hapmap]
rs1522755	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1522757	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1597989	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs1608214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17153732	1.00[CHD][hapmap]
rs17153766	1.00[CHD][hapmap]
rs1829806	0.90[AMR][1000 genomes]
rs1894123	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1949710	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1977985	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2027773	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2097162	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2187530	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2198452	1.00[CHD][hapmap];0.85[MKK][hapmap]
rs2213079	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2213080	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2213082	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2219071	0.82[YRI][hapmap]
rs4438055	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4479010	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4494319	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56204747	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6591519	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7927986	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7944381	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs940022	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59117800-59122200	Weak transcription	Gastric	stomach
2	chr11:59118600-59119000	Enhancers	Pancreas	Pancrea

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