Variant report

Variant	rs1829806
Chromosome Location	chr11:59137116-59137117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10736693	0.81[AMR][1000 genomes]
rs10736698	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10750914	0.81[AMR][1000 genomes]
rs10750920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1357375	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1377558	1.00[CHB][hapmap]
rs1453543	1.00[CHB][hapmap]
rs1453553	1.00[CHB][hapmap]
rs1522755	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1522757	1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1597989	0.83[YRI][hapmap]
rs1608214	0.90[AMR][1000 genomes]
rs17153732	1.00[CHB][hapmap]
rs17153766	1.00[CHB][hapmap]
rs1949710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2027773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2187530	0.85[JPT][hapmap];0.81[AMR][1000 genomes]
rs2198452	1.00[CHB][hapmap]
rs2213079	0.81[AMR][1000 genomes]
rs2213080	0.81[AMR][1000 genomes]
rs2213082	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2219071	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4438055	0.81[AMR][1000 genomes]
rs4479010	0.90[AMR][1000 genomes]
rs4494319	0.81[AMR][1000 genomes]
rs4556553	0.90[AMR][1000 genomes]
rs6591519	0.81[AMR][1000 genomes]
rs7927986	0.81[AMR][1000 genomes]
rs940022	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv541052	chr11:59119390-59185103	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1039690	chr11:59124719-59178832	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1047952	chr11:59124719-59221606	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59135000-59137200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr11:59135200-59137400	Enhancers	Primary B cells from peripheral blood	blood
3	chr11:59135400-59137200	Enhancers	Primary B cells from cord blood	blood

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