Variant report
| Variant | rs4479010 |
|---|---|
| Chromosome Location | chr11:59117515-59117516 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10437722 | 0.86[AMR][1000 genomes] |
| rs10736693 | 0.90[AMR][1000 genomes] |
| rs10736698 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs10750913 | 0.86[AMR][1000 genomes] |
| rs10750914 | 0.90[AMR][1000 genomes] |
| rs10750920 | 0.83[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs10896959 | 0.86[AMR][1000 genomes] |
| rs1357375 | 0.90[AMR][1000 genomes] |
| rs1522755 | 1.00[AMR][1000 genomes] |
| rs1597989 | 0.82[AFR][1000 genomes] |
| rs1608214 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1829806 | 0.90[AMR][1000 genomes] |
| rs1894123 | 0.86[AMR][1000 genomes] |
| rs1949710 | 0.83[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs1977985 | 0.86[AMR][1000 genomes] |
| rs2027773 | 0.83[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs2097162 | 0.82[AMR][1000 genomes] |
| rs2187530 | 0.90[AMR][1000 genomes] |
| rs2213079 | 0.90[AMR][1000 genomes] |
| rs2213080 | 0.90[AMR][1000 genomes] |
| rs2213082 | 0.85[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs4438055 | 0.90[AMR][1000 genomes] |
| rs4494319 | 0.90[AMR][1000 genomes] |
| rs4556553 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs56204747 | 0.86[AMR][1000 genomes] |
| rs6591519 | 0.90[AMR][1000 genomes] |
| rs7927986 | 0.90[AMR][1000 genomes] |
| rs7944381 | 0.86[AMR][1000 genomes] |
| rs940022 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1050013 | chr11:58394598-59221090 | Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| 2 | nsv948365 | chr11:58515163-59156405 | Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 59 gene(s) | inside rSNPs | diseases |
| 3 | nsv1046084 | chr11:59034871-59314519 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:59116200-59118600 | Weak transcription | Pancreas | Pancrea |
