Variant report

Variant	rs10736698
Chromosome Location	chr11:59145276-59145277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10736693	0.81[AMR][1000 genomes]
rs10750914	0.81[AMR][1000 genomes]
rs10750920	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792241	0.83[ASN][1000 genomes]
rs1357375	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1377558	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1453543	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1453545	0.83[ASN][1000 genomes]
rs1453553	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1522755	0.90[AMR][1000 genomes]
rs1597989	0.95[YRI][hapmap];0.89[AFR][1000 genomes]
rs1608214	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs17153732	1.00[CHB][hapmap]
rs17153766	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1829806	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1949710	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027773	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2187530	0.81[AMR][1000 genomes]
rs2198452	1.00[CHB][hapmap]
rs2213079	0.81[AMR][1000 genomes]
rs2213080	0.81[AMR][1000 genomes]
rs2213082	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2219071	1.00[CHB][hapmap]
rs4438055	0.81[AMR][1000 genomes]
rs4479010	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4494319	0.81[AMR][1000 genomes]
rs4556553	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6591519	0.81[AMR][1000 genomes]
rs7120664	0.83[ASN][1000 genomes]
rs7927986	0.81[AMR][1000 genomes]
rs940022	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv541052	chr11:59119390-59185103	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1039690	chr11:59124719-59178832	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1047952	chr11:59124719-59221606	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59144800-59145600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr11:59145000-59145400	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links