Variant report

Variant	nsv827295
Chromosome Location	chr15:35271409-35275645
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:3)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:35267358..35269882-chr15:35273203..35276166,3	K562	blood:
2	chr15:35271322..35272882-chr15:35274387..35275895,2	MCF-7	breast:
3	chr15:35266160..35271969-chr15:35278502..35282901,8	K562	blood:
4	chr15:35263427..35267661-chr15:35274185..35276277,3	MCF-7	breast:
5	chr15:35260390..35263299-chr15:35270062..35272008,3	K562	blood:
6	chr15:35272114..35275594-chr15:35276542..35279290,3	MCF-7	breast:
7	chr15:35269375..35271002-chr15:35273264..35275712,2	MCF-7	breast:
8	chr15:35271111..35273085-chr15:35278848..35280594,2	MCF-7	breast:
9	chr15:35270344..35273433-chr15:35279404..35282437,5	MCF-7	breast:
10	chr15:35273274..35276685-chr15:35278629..35280657,6	MCF-7	breast:
11	chr15:35271322..35272882-chr15:35274387..35275895,2	MCF-7	breast:
12	chr15:35260390..35261999-chr15:35270459..35271963,2	K562	blood:

No data

(count:3 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	ZNF770	hsa-miR-30b-5p	chr15:35272546-35272567
2	ZNF770	hsa-miR-186-5p	chr15:35272117-35272139
3	ZNF770	hsa-miR-30b-5p	chr15:35272552-35272546

Variant related genes	Relation type
ENSG00000212768	chromatin interactions
ENSG00000021776	chromatin interactions
ENSG00000198146	chromatin interactions

Extended variants
information (count: 205 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:205 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs552637043	chr15:35271417-35271418	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs181046099	chr15:35271429-35271430	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs564865833	chr15:35271479-35271480	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs184139301	chr15:35271491-35271492	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs544091477	chr15:35271500-35271501	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs562563743	chr15:35271502-35271503	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs558980040	chr15:35271524-35271525	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs570824085	chr15:35271636-35271637	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs369060906	chr15:35271687-35271688	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs371635688	chr15:35271744-35271745	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs202217790	chr15:35271830-35271831	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs116524840	chr15:35271844-35271845	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs548314782	chr15:35271851-35271852	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs560183218	chr15:35271860-35271861	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs538903845	chr15:35271874-35271875	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs527320697	chr15:35271890-35271891	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs147637150	chr15:35271892-35271893	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs369129044	chr15:35271913-35271914	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs552874688	chr15:35271922-35271923	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs373524197	chr15:35271939-35271940	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs138160516	chr15:35271940-35271941	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs538392975	chr15:35272011-35272012	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs114766388	chr15:35272018-35272019	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs190648999	chr15:35272036-35272037	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs535568631	chr15:35272063-35272064	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs142647235	chr15:35272078-35272079	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs181827206	chr15:35272080-35272081	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs539470846	chr15:35272088-35272089	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs558398153	chr15:35272126-35272127	Weak transcription Strong transcription	Chromatin interactive region miRNA target site	2 gene(s)	Overlapped CNVs	n/a
30	rs577072352	chr15:35272142-35272143	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs186145197	chr15:35272170-35272171	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs58721310	chr15:35272174-35272175	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs562541527	chr15:35272179-35272180	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs574618516	chr15:35272190-35272191	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs569790884	chr15:35272191-35272192	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs146012802	chr15:35272199-35272200	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs537346943	chr15:35272208-35272209	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs8032605	chr15:35272234-35272235	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs190764462	chr15:35272333-35272334	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs576412598	chr15:35272355-35272356	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs564719880	chr15:35272359-35272360	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs534334781	chr15:35272367-35272368	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs79675263	chr15:35272410-35272411	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs74008014	chr15:35272419-35272420	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs375992860	chr15:35272477-35272478	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs145761436	chr15:35272495-35272496	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs112928343	chr15:35272502-35272503	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs185864571	chr15:35272503-35272504	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs139563133	chr15:35272520-35272521	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs539408052	chr15:35272574-35272575	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
HDAC8	0	CNVD
NIPBL	0	CNVD
RAD21	0	CNVD
SMC1A	0	CNVD
SMC3	0	CNVD
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Angelman syndrome	16183798	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Abnormal corpus callosum	21572526	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Autism	19204725	CNVD
Schizophrenia	19204725	CNVD
Schizophrenia	19149910	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Legius syndrome	19443465	CNVD
Holoprosencephaly	21359414	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Cancer	17440070	CNVD
Basal cell lymphoma	17053054	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
lymphocytic leukemia	21291569	CNVD
Cancer	20164920	CNVD

Chromatin state (count:267 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35262000-35276600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:35262000-35278600	Weak transcription	Gastric	stomach
3	chr15:35262400-35273200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr15:35262400-35273400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr15:35262400-35273400	Weak transcription	GM12878-XiMat	blood
6	chr15:35262400-35273600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:35262400-35273600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:35262400-35273600	Weak transcription	Fetal Intestine Large	intestine
9	chr15:35262400-35273600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:35262400-35274600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr15:35262400-35274600	Weak transcription	NHLF	lung
12	chr15:35262400-35278600	Weak transcription	HSMMtube	muscle
13	chr15:35262400-35279000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:35262400-35279000	Weak transcription	Aorta	Aorta
15	chr15:35262600-35272800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:35262600-35273200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr15:35262600-35273200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:35262600-35273200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr15:35262600-35273400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:35262600-35273400	Weak transcription	Primary T cells from cord blood	blood
21	chr15:35262600-35273400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr15:35262600-35273400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr15:35262600-35273600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr15:35262600-35273600	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr15:35262600-35273600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:35262600-35273600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:35262600-35273600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr15:35262600-35273600	Weak transcription	Liver	Liver
29	chr15:35262600-35273600	Weak transcription	Brain Germinal Matrix	brain
30	chr15:35262600-35273600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr15:35262600-35273600	Weak transcription	Hela-S3	cervix
32	chr15:35262600-35273600	Weak transcription	HMEC	breast
33	chr15:35262600-35273600	Weak transcription	NHEK	skin
34	chr15:35262600-35273800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr15:35262600-35273800	Weak transcription	Fetal Lung	lung
36	chr15:35262600-35273800	Weak transcription	NHDF-Ad	bronchial
37	chr15:35262600-35274200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr15:35262600-35274400	Weak transcription	Fetal Muscle Leg	muscle
39	chr15:35262600-35274400	Weak transcription	NH-A	brain
40	chr15:35262600-35274600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:35262600-35274600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr15:35262600-35274600	Weak transcription	Left Ventricle	heart
43	chr15:35262600-35274800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr15:35262600-35274800	Weak transcription	Fetal Kidney	kidney
45	chr15:35262600-35274800	Weak transcription	Rectal Smooth Muscle	rectum
46	chr15:35262600-35274800	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr15:35262600-35275000	Weak transcription	Osteobl	bone
48	chr15:35262600-35276200	Weak transcription	Primary B cells from cord blood	blood
49	chr15:35262600-35276200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr15:35262600-35276200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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