Variant report

Variant	rs569790884
Chromosome Location	chr15:35272191-35272192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:35271111..35273085-chr15:35278848..35280594,2	MCF-7	breast:
2	chr15:35271322..35272882-chr15:35274387..35275895,2	MCF-7	breast:
3	chr15:35270344..35273433-chr15:35279404..35282437,5	MCF-7	breast:
4	chr15:35272114..35275594-chr15:35276542..35279290,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198146	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv827295	chr15:35271409-35275645	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35262000-35276600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:35262000-35278600	Weak transcription	Gastric	stomach
3	chr15:35262400-35273200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr15:35262400-35273400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr15:35262400-35273400	Weak transcription	GM12878-XiMat	blood
6	chr15:35262400-35273600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:35262400-35273600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:35262400-35273600	Weak transcription	Fetal Intestine Large	intestine
9	chr15:35262400-35273600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:35262400-35274600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr15:35262400-35274600	Weak transcription	NHLF	lung
12	chr15:35262400-35278600	Weak transcription	HSMMtube	muscle
13	chr15:35262400-35279000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:35262400-35279000	Weak transcription	Aorta	Aorta
15	chr15:35262600-35272800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:35262600-35273200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr15:35262600-35273200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:35262600-35273200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr15:35262600-35273400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:35262600-35273400	Weak transcription	Primary T cells from cord blood	blood
21	chr15:35262600-35273400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr15:35262600-35273400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr15:35262600-35273600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr15:35262600-35273600	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr15:35262600-35273600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:35262600-35273600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:35262600-35273600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr15:35262600-35273600	Weak transcription	Liver	Liver
29	chr15:35262600-35273600	Weak transcription	Brain Germinal Matrix	brain
30	chr15:35262600-35273600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr15:35262600-35273600	Weak transcription	Hela-S3	cervix
32	chr15:35262600-35273600	Weak transcription	HMEC	breast
33	chr15:35262600-35273600	Weak transcription	NHEK	skin
34	chr15:35262600-35273800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr15:35262600-35273800	Weak transcription	Fetal Lung	lung
36	chr15:35262600-35273800	Weak transcription	NHDF-Ad	bronchial
37	chr15:35262600-35274200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr15:35262600-35274400	Weak transcription	Fetal Muscle Leg	muscle
39	chr15:35262600-35274400	Weak transcription	NH-A	brain
40	chr15:35262600-35274600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:35262600-35274600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr15:35262600-35274600	Weak transcription	Left Ventricle	heart
43	chr15:35262600-35274800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr15:35262600-35274800	Weak transcription	Fetal Kidney	kidney
45	chr15:35262600-35274800	Weak transcription	Rectal Smooth Muscle	rectum
46	chr15:35262600-35274800	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr15:35262600-35275000	Weak transcription	Osteobl	bone
48	chr15:35262600-35276200	Weak transcription	Primary B cells from cord blood	blood
49	chr15:35262600-35276200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr15:35262600-35276200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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