Variant report

Variant	nsv827754
Chromosome Location	chr16:76539542-76542790
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:76542177..76544098-chr6:26155995..26158781,2	MCF-7	breast:
2	chr16:76534271..76535887-chr16:76537682..76540215,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158373	chromatin interactions
ENSG00000168298	chromatin interactions

Extended variants
information (count: 128 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:128 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs560847085	chr16:76539559-76539560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs577428647	chr16:76539575-76539576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs149162739	chr16:76539602-76539603	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs60537766	chr16:76539619-76539620	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs531920758	chr16:76539664-76539665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs144654576	chr16:76539667-76539668	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs112319649	chr16:76539756-76539757	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs116650687	chr16:76539816-76539817	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs187447834	chr16:76539822-76539823	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs147871445	chr16:76539841-76539842	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs59452342	chr16:76539884-76539885	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs552431785	chr16:76539952-76539953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs568997386	chr16:76539982-76539983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs192404397	chr16:76540057-76540058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs4275875	chr16:76540062-76540063	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs554706830	chr16:76540119-76540120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs541882171	chr16:76540128-76540129	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs79279704	chr16:76540162-76540163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs4417572	chr16:76540194-76540195	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs201924916	chr16:76540284-76540285	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs200357958	chr16:76540292-76540293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs553459330	chr16:76540295-76540296	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs576754300	chr16:76540297-76540298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs142765004	chr16:76540312-76540313	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs202185159	chr16:76540316-76540317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs374475664	chr16:76540318-76540319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs528903436	chr16:76540319-76540320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs551519097	chr16:76540322-76540323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs184034541	chr16:76540336-76540337	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs546215677	chr16:76540357-76540358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs112411556	chr16:76540367-76540368	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs7500543	chr16:76540387-76540388	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs8058869	chr16:76540391-76540392	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs373997672	chr16:76540395-76540396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs116481286	chr16:76540405-76540406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs541973773	chr16:76540408-76540409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs112479407	chr16:76540414-76540415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs187819200	chr16:76540421-76540422	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs111787079	chr16:76540422-76540423	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs73618181	chr16:76540433-76540434	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs564357571	chr16:76540454-76540455	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs551839129	chr16:76540462-76540463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs374279092	chr16:76540463-76540464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs533351495	chr16:76540486-76540487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs8053908	chr16:76540501-76540502	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs569084909	chr16:76540515-76540516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs192498677	chr16:76540619-76540620	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs548368694	chr16:76540642-76540643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs184500025	chr16:76540708-76540709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs557356815	chr16:76540735-76540736	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17001317	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17603634	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	17245344	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21806811	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Melanoma	22183965	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Poland''s syndrome	22110015	CNVD
Neuroblastoma	21899760	CNVD
Liver carcinoma	19366792	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Ovarian cancer	20844748	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	19156837	CNVD
Acute myeloid leukemia	17377590	CNVD
Breast cancer	20409316	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	21509527	CNVD
Schizophrenia	23813976	CNVD
Lung cancer	24585490	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:76525200-76554000	Weak transcription	Brain Inferior Temporal Lobe	brain

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