Variant report

Variant	rs552431785
Chromosome Location	chr16:76539952-76539953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:76534271..76535887-chr16:76537682..76540215,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:48 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059162	chr16:75929348-76730816	Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv572995	chr16:75935025-76708417	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv572996	chr16:75935025-76735249	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv817220	chr16:75939705-76735383	ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1056021	chr16:75955522-76729765	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv542962	chr16:75955522-76729765	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv906936	chr16:76031737-76768178	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv817549	chr16:76067068-76582099	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv869200	chr16:76227867-76695732	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv906943	chr16:76413757-76768178	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv1063069	chr16:76462850-77214064	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
12	nsv542963	chr16:76462850-77214064	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
13	nsv833287	chr16:76482823-76666426	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
14	nsv1883	chr16:76519215-76563112	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv906944	chr16:76521236-76768178	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
16	nsv529621	chr16:76521425-76769398	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
17	nsv573034	chr16:76531120-76542393	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv573035	chr16:76531120-76543171	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	esv1850941	chr16:76535342-76543447	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	nsv511568	chr16:76535342-76544758	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	esv3312540	chr16:76537151-76545949	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	esv3312537	chr16:76537976-76545324	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
23	esv3499287	chr16:76538001-76545149	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
24	nsv819599	chr16:76538187-76543948	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
25	esv3499284	chr16:76538551-76544257	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	esv990642	chr16:76538778-76544114	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
27	esv3312542	chr16:76538901-76544599	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
28	esv8906	chr16:76538918-76544219	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
29	esv3312539	chr16:76539011-76544130	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
30	esv3499282	chr16:76539026-76544107	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
31	esv3499289	chr16:76539027-76544133	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
32	nsv512446	chr16:76539033-76544041	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
33	esv3499283	chr16:76539047-76544062	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
34	esv3499288	chr16:76539047-76544067	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
35	esv3499281	chr16:76539051-76545149	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
36	esv4230	chr16:76539053-76544141	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
37	esv3312535	chr16:76539055-76544095	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
38	esv3312538	chr16:76539058-76544096	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
39	esv3312536	chr16:76539072-76544049	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
40	esv3499290	chr16:76539079-76544072	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
41	esv989434	chr16:76539133-76544029	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
42	esv12669	chr16:76539133-76544029	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
43	esv3312543	chr16:76539134-76544026	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
44	esv3499291	chr16:76539134-76544026	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
45	esv989330	chr16:76539325-76543564	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
46	nsv827752	chr16:76539325-76543564	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
47	nsv514815	chr16:76539523-76543427	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
48	nsv827754	chr16:76539542-76542790	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:76525200-76554000	Weak transcription	Brain Inferior Temporal Lobe	brain

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