Variant report

Variant	nsv828908
Chromosome Location	chr2:36899275-36900050
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39344148..39344668-chr2:36899113..36899743,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2110880	chr2:36899292-36899293	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs185548643	chr2:36899314-36899315	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs2110879	chr2:36899319-36899320	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs527476601	chr2:36899461-36899462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs545982545	chr2:36899463-36899464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs539599543	chr2:36899481-36899482	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs386644882	chr2:36899498-36899499	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs4404252	chr2:36899499-36899500	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs550230324	chr2:36899519-36899520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs562050845	chr2:36899537-36899538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs529655849	chr2:36899553-36899554	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs548106967	chr2:36899563-36899564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs566145719	chr2:36899702-36899703	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs4233915	chr2:36899706-36899707	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs368965085	chr2:36899723-36899724	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs72871804	chr2:36899726-36899727	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs73924128	chr2:36899788-36899789	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs537525348	chr2:36899802-36899803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs555772562	chr2:36899816-36899817	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs4561641	chr2:36899859-36899860	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs548664574	chr2:36899860-36899861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs115628745	chr2:36899884-36899885	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs2192890	chr2:36899898-36899899	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs572164674	chr2:36899907-36899908	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs545952714	chr2:36899909-36899910	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs564108031	chr2:36899923-36899924	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs537246035	chr2:36899934-36899935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs115239377	chr2:36899958-36899959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs4608492	chr2:36899960-36899961	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs2888392	chr2:36900006-36900007	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs571041489	chr2:36900030-36900031	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs35399190	chr2:36900039-36900040	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Breast cancer	17393978	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17387387	CNVD
Neuroblastoma	17533364	CNVD
Neuroblastoma	18923191	CNVD
Endometrial cancer	22040021	CNVD
Adrenal tumor	17535989	CNVD
Breast cancer	21264507	CNVD
Basal cell lymphoma	17053054	CNVD
Medulloblastoma	17522785	CNVD
Cancer	23418310	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Ependymoma	16718352	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Prostate cancer	18632612	CNVD
Bladder cancer	21909424	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	20505157	CNVD
Autism	17483303	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Medulloblastoma	20607354	CNVD
Leukemia	18628472	CNVD
Autism	19521722	CNVD
Autism	18522746	CNVD
Breast cancer	21364760	CNVD
Wilms tumour	21544195	CNVD
Non-small cell lung cancer	18927303	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	21965145	CNVD
Breast cancer	16397240	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21508638	CNVD
Neurodevelopmental disorder	22521361	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Melanoma	18172304	CNVD
Cancer	16751803	CNVD
T-cell lymphomas	22341440	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36892000-36900200	Weak transcription	A549	lung
2	chr2:36895800-36903600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:36899200-36904600	Weak transcription	Muscle Satellite Cultured Cells	--

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