Variant report

Variant	rs4404252
Chromosome Location	chr2:36899499-36899500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39344148..39344668-chr2:36899113..36899743,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10173973	0.81[ASN][1000 genomes]
rs10490668	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11679313	0.86[ASN][1000 genomes]
rs12995457	0.87[ASN][1000 genomes]
rs13003451	0.84[EUR][1000 genomes]
rs13397368	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1468806	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1468807	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17019410	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2110879	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2160331	0.84[EUR][1000 genomes]
rs2372704	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34028336	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34634067	0.84[EUR][1000 genomes]
rs35399190	0.84[EUR][1000 genomes]
rs35542126	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4561641	0.81[AMR][1000 genomes]
rs4608492	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4670579	0.87[ASN][1000 genomes]
rs4670582	0.81[ASN][1000 genomes]
rs56346477	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6706876	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6717280	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6726841	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6730818	0.87[AMR][1000 genomes]
rs6730823	0.83[AMR][1000 genomes]
rs6752105	0.87[ASN][1000 genomes]
rs6752237	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6752446	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6755720	0.84[EUR][1000 genomes]
rs6755744	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6755881	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6756051	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7558205	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7608120	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9749749	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010985	chr2:36707157-36942066	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv535642	chr2:36707157-36942066	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1007757	chr2:36838387-37011384	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv535643	chr2:36838387-37011384	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv963871	chr2:36896580-36913813	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv828908	chr2:36899275-36900050	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36892000-36900200	Weak transcription	A549	lung
2	chr2:36895800-36903600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:36899200-36904600	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links