Variant report

Variant	nsv830726
Chromosome Location	chr6:91750692-91921838
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:28)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:28 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:91783283..91785373-chr6:91788770..91790311,2	MCF-7	breast:
2	chr6:91776946..91779855-chr6:91787980..91790686,2	K562	blood:
3	chr6:91790871..91791689-chr6:91984333..91984889,2	MCF-7	breast:
4	chr6:91791393..91793294-chr6:91796040..91797967,2	K562	blood:
5	chr6:91778241..91779921-chr6:91800557..91802726,2	K562	blood:
6	chr6:91793724..91795491-chr6:91797204..91799841,2	K562	blood:
7	chr6:91776668..91779603-chr6:91785078..91787430,2	K562	blood:
8	chr6:91762927..91765552-chr6:91780023..91782303,2	K562	blood:
9	chr6:91864334..91866190-chr6:91869646..91872638,2	K562	blood:
10	chr6:91842487..91844992-chr6:91845822..91848509,2	K562	blood:
11	chr6:91569004..91569554-chr6:91790816..91791615,3	MCF-7	breast:
12	chr6:91791393..91793294-chr6:91796040..91797967,2	K562	blood:
13	chr6:91776946..91779855-chr6:91787980..91790686,2	K562	blood:
14	chr6:91793724..91795491-chr6:91797204..91799841,2	K562	blood:
15	chr6:91793633..91795491-chr6:91798341..91801324,2	K562	blood:
16	chr6:91786560..91789337-chr6:91795291..91797567,2	K562	blood:
17	chr6:91842487..91844992-chr6:91845822..91848509,2	K562	blood:
18	chr6:91778241..91779921-chr6:91800557..91802726,2	K562	blood:
19	chr6:91864334..91866190-chr6:91869646..91872638,2	K562	blood:
20	chr6:91909528..91912295-chr6:91912373..91915298,3	K562	blood:
21	chr6:91762927..91765552-chr6:91780023..91782303,2	K562	blood:
22	chr6:91783283..91785373-chr6:91788770..91790311,2	MCF-7	breast:
23	chr6:91790906..91791843-chr6:91985660..91986411,2	MCF-7	breast:
24	chr6:91790975..91791648-chr6:93353782..93354715,3	MCF-7	breast:
25	chr6:91776668..91779603-chr6:91785078..91787430,2	K562	blood:
26	chr6:91786560..91789337-chr6:91795291..91797567,2	K562	blood:
27	chr6:91909528..91912295-chr6:91912373..91915298,3	K562	blood:
28	chr6:91793633..91795491-chr6:91798341..91801324,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000265419	chromatin interactions

Extended variants
information (count: 3928 )
Associated
traits (count: 104 )

Variant overlapped rSNPs/rCNVs (count:3928 , 50 per page) page: 1 2 3 4 5 6 7 ... 79

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9294477	chr6:91752811-91752812	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs553199225	chr6:91752828-91752829	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs201842171	chr6:91752875-91752876	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs573768274	chr6:91752899-91752900	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs573142347	chr6:91752923-91752924	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs541852479	chr6:91752940-91752941	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs562151344	chr6:91752962-91752963	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs377761036	chr6:91753004-91753005	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs9294478	chr6:91753015-91753016	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs6936812	chr6:91753027-91753028	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs564311366	chr6:91753040-91753041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs16883952	chr6:91753080-91753081	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs192824573	chr6:91753133-91753134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs543700982	chr6:91753139-91753140	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs565635552	chr6:91753140-91753141	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs367720759	chr6:91753157-91753158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs6937466	chr6:91753242-91753243	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs547863632	chr6:91753357-91753358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs568093206	chr6:91753390-91753391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs6937386	chr6:91753428-91753429	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs6917243	chr6:91753443-91753444	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs570617924	chr6:91753468-91753469	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs9362809	chr6:91753480-91753481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs533001033	chr6:91753483-91753484	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs11970222	chr6:91753581-91753582	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs553176053	chr6:91753612-91753613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs147259242	chr6:91753629-91753630	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs184076404	chr6:91753633-91753634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs542343165	chr6:91753640-91753641	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs80019836	chr6:91753667-91753668	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs575255850	chr6:91753680-91753681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs79730295	chr6:91753803-91753804	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs139291193	chr6:91753811-91753812	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs371062825	chr6:91753813-91753814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs141516745	chr6:91753816-91753817	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs540461599	chr6:91753845-91753846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs560773260	chr6:91753871-91753872	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs528154879	chr6:91753907-91753908	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs537383264	chr6:91753949-91753950	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs555683217	chr6:91753950-91753951	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs188025348	chr6:91753961-91753962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs565273857	chr6:91753969-91753970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs570755124	chr6:91753974-91753975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs539759397	chr6:91753990-91753991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs150912560	chr6:91753992-91753993	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs566686350	chr6:91754023-91754024	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs180977552	chr6:91754077-91754078	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs139422063	chr6:91754142-91754143	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs543095899	chr6:91754152-91754153	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs575195465	chr6:91754194-91754195	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:104)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	21364760	CNVD
Developmental delay	19490664	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Adrenocortical carcinoma	18281524	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:451 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:91752800-91753000	Enhancers	Fetal Kidney	kidney
2	chr6:91753000-91757000	Weak transcription	Fetal Kidney	kidney
3	chr6:91754000-91754200	Enhancers	HSMM	muscle
4	chr6:91754000-91754400	Enhancers	Fetal Lung	lung
5	chr6:91754400-91754800	Weak transcription	Fetal Lung	lung
6	chr6:91754600-91755000	Enhancers	HSMMtube	muscle
7	chr6:91754600-91755400	Enhancers	Brain Germinal Matrix	brain
8	chr6:91754800-91755000	Enhancers	Fetal Lung	lung
9	chr6:91755000-91757400	Weak transcription	Fetal Lung	lung
10	chr6:91762400-91763000	Active TSS	H9 Cell Line	embryonic stem cell
11	chr6:91762400-91763000	Active TSS	Placenta	Placenta
12	chr6:91762400-91763200	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr6:91762400-91763200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
14	chr6:91762400-91763200	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr6:91762600-91763000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr6:91762600-91763000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:91762600-91763200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
18	chr6:91762600-91763400	Active TSS	K562	blood
19	chr6:91770000-91770800	Enhancers	Ovary	ovary
20	chr6:91775000-91775200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:91776000-91776600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:91776200-91777000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:91776200-91777000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr6:91776200-91777400	Enhancers	Adipose Nuclei	Adipose
25	chr6:91777000-91777400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:91777400-91777600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr6:91777400-91779600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr6:91777600-91779200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr6:91779200-91781200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr6:91779600-91779800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr6:91779800-91784000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:91781200-91789600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr6:91784000-91784200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr6:91784200-91785400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:91789600-91790400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr6:91789600-91791200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:91789600-91792400	Enhancers	Fetal Stomach	stomach
38	chr6:91789800-91790000	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr6:91789800-91790000	Enhancers	NH-A	brain
40	chr6:91789800-91792400	Enhancers	Brain Germinal Matrix	brain
41	chr6:91789800-91793400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:91790000-91791400	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr6:91790000-91791400	Weak transcription	NH-A	brain
44	chr6:91790200-91791400	Enhancers	Fetal Intestine Small	intestine
45	chr6:91790400-91790800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr6:91790400-91790800	Enhancers	Fetal Intestine Large	intestine
47	chr6:91790400-91791200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr6:91790800-91791000	Weak transcription	Fetal Intestine Large	intestine
49	chr6:91790800-91793200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr6:91791000-91791200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links