Variant report
| Variant | rs9294477 |
|---|---|
| Chromosome Location | chr6:91752811-91752812 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11970222 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1368761 | 0.84[ASN][1000 genomes] |
| rs1897706 | 0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2217724 | 0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs62417785 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6454834 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6917243 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6936812 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6937386 | 0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6937466 | 0.96[ASN][1000 genomes] |
| rs7751490 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7752240 | 0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9294473 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9294478 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9342257 | 0.84[EUR][1000 genomes] |
| rs9345074 | 0.83[EUR][1000 genomes] |
| rs9345075 | 0.83[EUR][1000 genomes] |
| rs9362804 | 0.83[EUR][1000 genomes] |
| rs9362805 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9451556 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv523939 | chr6:91067623-91790493 | Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv463946 | chr6:91710872-91769607 | Enhancers Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv2752130 | chr6:91740447-92196479 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv830726 | chr6:91750692-91921838 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:91752800-91753000 | Enhancers | Fetal Kidney | kidney |
