Variant report

Variant	nsv831286
Chromosome Location	chr8:35802388-35950586
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:35899435..35901974-chr8:35902766..35905726,2	K562	blood:
2	chr8:35787657..35788212-chr8:35806131..35807030,2	MCF-7	breast:
3	chr8:35899435..35901974-chr8:35902766..35905726,2	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UNC5D-2	chr8:35828131-35828183	ENSG00000253452
2	lnc-RP11-419C23.1.1-4	chr8:35861838-35862110	ENSG00000253524
3	lnc-RP11-419C23.1.1-4	chr8:35892385-35892466	ENSG00000253524
4	lnc-RP11-419C23.1.1-4	chr8:35861834-35862110	ENSG00000253524

No data

Extended variants
information (count: 2591 )
Associated
traits (count: 117 )

Variant overlapped rSNPs/rCNVs (count:2591 , 50 per page) page: 1 2 3 4 5 6 7 ... 52

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs530856103	chr8:35802405-35802406	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs549872542	chr8:35802408-35802409	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs184731482	chr8:35802432-35802433	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs143317090	chr8:35802439-35802440	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs557276133	chr8:35802471-35802472	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs35884562	chr8:35802529-35802530	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs78072938	chr8:35802545-35802546	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs370251574	chr8:35802593-35802594	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs541191174	chr8:35802612-35802613	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs565923628	chr8:35802618-35802619	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs16884562	chr8:35802619-35802620	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs555146273	chr8:35802627-35802628	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs376192517	chr8:35802634-35802635	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs16884564	chr8:35802658-35802659	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs537784603	chr8:35802671-35802672	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs555971937	chr8:35802730-35802731	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs77223806	chr8:35802801-35802802	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs141794792	chr8:35802812-35802813	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs147108681	chr8:35802846-35802847	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs114690579	chr8:35802855-35802856	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs545377237	chr8:35802869-35802870	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs574589827	chr8:35802942-35802943	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs189446390	chr8:35802970-35802971	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs181875295	chr8:35803004-35803005	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs138580014	chr8:35803033-35803034	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs563512410	chr8:35803063-35803064	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs185211207	chr8:35803081-35803082	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs189686515	chr8:35803091-35803092	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs73586181	chr8:35803099-35803100	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs181188116	chr8:35803108-35803109	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs547393482	chr8:35803159-35803160	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs565787022	chr8:35803176-35803177	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs530232324	chr8:35803187-35803188	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs185151618	chr8:35803205-35803206	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs570260697	chr8:35803213-35803214	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs141822747	chr8:35803231-35803232	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs559335177	chr8:35803232-35803233	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs571172079	chr8:35803279-35803280	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs530774202	chr8:35803285-35803286	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs549460283	chr8:35803290-35803291	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs189562985	chr8:35803310-35803311	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs181895119	chr8:35803337-35803338	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs528311242	chr8:35803355-35803356	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs574552274	chr8:35803374-35803375	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs541941647	chr8:35803392-35803393	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs374509701	chr8:35803439-35803440	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs186448990	chr8:35803493-35803494	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs150621149	chr8:35803535-35803536	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs545769875	chr8:35803550-35803551	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs7005299	chr8:35803572-35803573	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:117)

Disease	PMID	Source
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Prostate cancer	21965145	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Colorectal cancer	16272173	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Lung cancer	18438408	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Myxofibrosarcoma	16751306	CNVD
Immune disease	21572526	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Kallmann Syndrome 2	22470819	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Pancreatic cancer	21811587	CNVD
Multiple myeloma	16461302	CNVD
Developmental delay	21373258	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	17603634	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Multiple myeloma	16616336	CNVD
Disorders of sex development	21048976	CNVD
Testicular cancer	18059402	CNVD
Breast cancer	21806811	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hepatocellular carcinoma	16750200	CNVD
Bladder cancer	19088036	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	20459607	CNVD
Renal cell carcinoma	18765545	CNVD
Colorectal cancer	16912164	CNVD
Neuroticism	17667963	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Breast cancer	17001308	CNVD
Breast cancer	17157792	CNVD
Cancer	17001308	CNVD
Cancer	18840272	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	18382360	CNVD
Ductal carcinoma	18381933	CNVD
Breast cancer	21328542	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Intellectual disability	22045946	CNVD
Lung cancer	17925434	CNVD
Uveal melanoma	20484589	CNVD
Breast cancer	16608533	CNVD
Breast cancer	21364760	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21785460	CNVD
Renal cell carcinoma	21215367	CNVD
Chordoma	21215367	CNVD

Chromatin state (count:275 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35798200-35803000	Weak transcription	Brain Germinal Matrix	brain
2	chr8:35798400-35802600	Weak transcription	Brain Substantia Nigra	brain
3	chr8:35801000-35804200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:35801200-35802400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr8:35801200-35803800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr8:35801200-35805000	Enhancers	HSMM	muscle
7	chr8:35801400-35803600	Enhancers	Brain Hippocampus Middle	brain
8	chr8:35801600-35802400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:35801600-35802400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr8:35801600-35803200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr8:35801600-35803800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr8:35801800-35802400	Enhancers	Brain Cingulate Gyrus	brain
13	chr8:35801800-35802400	Enhancers	Osteobl	bone
14	chr8:35801800-35802600	Enhancers	Brain Angular Gyrus	brain
15	chr8:35801800-35803600	Enhancers	Fetal Intestine Small	intestine
16	chr8:35801800-35803800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr8:35801800-35803800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr8:35801800-35803800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr8:35801800-35804600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:35802000-35802400	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr8:35802000-35802800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:35802000-35803600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr8:35802000-35803800	Enhancers	H9 Cell Line	embryonic stem cell
24	chr8:35802000-35803800	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr8:35802000-35803800	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr8:35802000-35803800	Enhancers	HSMMtube	muscle
27	chr8:35802200-35802400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr8:35802200-35802400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr8:35802200-35802600	Enhancers	Fetal Intestine Large	intestine
30	chr8:35802200-35803400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr8:35802200-35803800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr8:35802200-35806800	Weak transcription	Brain Anterior Caudate	brain
33	chr8:35802400-35803200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr8:35802400-35803400	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr8:35802400-35803600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr8:35802400-35803600	Weak transcription	Osteobl	bone
37	chr8:35802400-35803800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr8:35802400-35804400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr8:35802600-35803200	Enhancers	Brain Substantia Nigra	brain
40	chr8:35802600-35803400	Weak transcription	Brain Angular Gyrus	brain
41	chr8:35802800-35803200	Enhancers	Fetal Intestine Large	intestine
42	chr8:35802800-35803600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr8:35803000-35803600	Enhancers	Brain Germinal Matrix	brain
44	chr8:35803200-35803600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
45	chr8:35803200-35803800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr8:35803200-35806200	Weak transcription	Brain Substantia Nigra	brain
47	chr8:35803400-35803600	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr8:35803400-35803600	Enhancers	Brain Angular Gyrus	brain
49	chr8:35803400-35803800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr8:35803600-35803800	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links