Variant report

Variant	nsv831615
Chromosome Location	chr9:72852705-73019692
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1891)
CpG islands
(count:671)
Chromatin interactive
region (count:130)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:7)

(count:1891 , 50 per page) page: 1 2 3 4 5 6 7 ... 38

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:72919759-72920057	HepG2	liver:	n/a	n/a
2	ARID3A	chr9:72872425-72872893	HepG2	liver:	n/a	n/a
3	ARID3A	chr9:72955515-72955832	K562	blood:	n/a	n/a
4	ARID3A	chr9:72874898-72875420	HepG2	liver:	n/a	n/a
5	ARID3A	chr9:72873550-72874300	HepG2	liver:	n/a	n/a
6	ARID3A	chr9:72870997-72871503	K562	blood:	n/a	n/a
7	ARID3A	chr9:72955526-72955778	HepG2	liver:	n/a	n/a
8	ARID3A	chr9:72873870-72874313	K562	blood:	n/a	n/a
9	ARID3A	chr9:73013014-73013460	K562	blood:	n/a	n/a
10	ARID3A	chr9:72872805-72873313	K562	blood:	n/a	n/a
11	ARID3A	chr9:72949588-72949758	K562	blood:	n/a	n/a
12	ARID3A	chr9:73007191-73007443	K562	blood:	n/a	n/a
13	ATF1	chr9:72871016-72871379	K562	blood:	n/a	n/a
14	ATF1	chr9:73013017-73013462	K562	blood:	n/a	n/a
15	ATF2	chr9:72873588-72874529	GM12878	blood:	n/a	chr9:72873818-72873829
16	ATF2	chr9:72873014-72873513	GM12878	blood:	n/a	n/a
17	ATF2	chr9:72873102-72873545	GM12878	blood:	n/a	n/a
18	ATF2	chr9:72877254-72878068	GM12878	blood:	n/a	n/a
19	ATF2	chr9:72873787-72874526	GM12878	blood:	n/a	chr9:72873818-72873829
20	ATF3	chr9:72873745-72874177	A549	lung:	n/a	chr9:72873808-72873828 chr9:72873806-72873815 chr9:72873816-72873829 chr9:72873817-72873830 chr9:72873818-72873829
21	ATF3	chr9:73014021-73014376	K562	blood:	n/a	n/a
22	BACH1	chr9:72873522-72874058	K562	blood:	n/a	n/a
23	BACH1	chr9:72873430-72874662	H1-hESC	embryonic stem cell:	n/a	n/a
24	BATF	chr9:72874173-72874524	GM12878	blood:	n/a	n/a
25	BATF	chr9:73013108-73013372	GM12878	blood:	n/a	n/a
26	BATF	chr9:72877297-72877637	GM12878	blood:	n/a	n/a
27	BATF	chr9:72878363-72878650	GM12878	blood:	n/a	chr9:72878473-72878484
28	BATF	chr9:72873122-72873481	GM12878	blood:	n/a	n/a
29	BATF	chr9:72873088-72873505	GM12878	blood:	n/a	n/a
30	BCL11A	chr9:72874143-72874430	GM12878	blood:	n/a	n/a
31	BCL11A	chr9:72874083-72874428	GM12878	blood:	n/a	n/a
32	BCL3	chr9:72873684-72874558	A549	lung:	n/a	chr9:72873786-72873795 chr9:72873899-72873912
33	BCL3	chr9:72873738-72874331	GM12878	blood:	n/a	chr9:72873786-72873795 chr9:72873899-72873912
34	BCLAF1	chr9:72873088-72874424	GM12878	blood:	n/a	chr9:72873786-72873795 chr9:72873899-72873912
35	BCLAF1	chr9:72873698-72874439	GM12878	blood:	n/a	chr9:72873786-72873795 chr9:72873899-72873912
36	BHLHE40	chr9:73012964-73013559	K562	blood:	n/a	n/a
37	BHLHE40	chr9:72960521-72960567	GM12878	blood:	n/a	n/a
38	BHLHE40	chr9:72873325-72874461	K562	blood:	n/a	n/a
39	BHLHE40	chr9:72873154-72874736	GM12878	blood:	n/a	n/a
40	BHLHE40	chr9:72990200-72990400	K562	blood:	n/a	n/a
41	BHLHE40	chr9:73013171-73013427	GM12878	blood:	n/a	n/a
42	BRCA1	chr9:72873515-72874570	Hela-S3	cervix:	n/a	n/a
43	BRCA1	chr9:72942787-72942802	GM12878	blood:	n/a	n/a
44	BRCA1	chr9:72873630-72874095	H1-hESC	embryonic stem cell:	n/a	n/a
45	BRCA1	chr9:72873721-72874180	GM12878	blood:	n/a	n/a
46	BRCA1	chr9:72873725-72874120	HepG2	liver:	n/a	n/a
47	BRCA1	chr9:72979870-72980000	Hela-S3	cervix:	n/a	n/a
48	CBX3	chr9:72943512-72943910	K562	blood:	n/a	n/a
49	CBX3	chr9:72870944-72871522	K562	blood:	n/a	n/a
50	CBX3	chr9:72907284-72907572	K562	blood:	n/a	n/a

(count:671 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:72873728-72873778	AoSMC	blood vessel:	n/a
2	chr9:72871343-72871393	GM12878	blood:	n/a
3	chr9:72877684-72877734	K562	blood:	n/a
4	chr9:72874251-72874301	IMR90	lung:	fetal
5	chr9:72874528-72874578	HEEpiC	esophagus:	n/a
6	chr9:72978571-72978621	AG04449	skin:	fetal
7	chr9:72877684-72877734	HCF	heart:	n/a
8	chr9:72877684-72877734	T-47D	breast:	n/a
9	chr9:72873373-72873423	HEK293	kidney:	embryo
10	chr9:72874528-72874578	SK-N-MC	brain:	n/a
11	chr9:72873544-72873594	NH-A	brain:	n/a
12	chr9:72871343-72871393	GM19239	blood:	n/a
13	chr9:72873345-72873395	HUVEC	blood vessel:	n/a
14	chr9:72874528-72874578	GM12891	blood:	n/a
15	chr9:72872391-72872441	Caco-2	colon:	n/a
16	chr9:72877684-72877734	NB4	blood:	n/a
17	chr9:72873728-72873778	HEEpiC	esophagus:	n/a
18	chr9:72873544-72873594	AG09309	skin:	n/a
19	chr9:72873345-72873395	Caco-2	colon:	n/a
20	chr9:72872391-72872441	AG10803	skin:	n/a
21	chr9:72899321-72899371	MCF10A-Er-Src	breast:	n/a
22	chr9:72873728-72873778	HL-60	blood:	n/a
23	chr9:72978571-72978621	GM12891	blood:	n/a
24	chr9:72873728-72873778	H1-hESC	embryonic stem cell:	embryo
25	chr9:72899321-72899371	Hela-S3	cervix:	n/a
26	chr9:72899321-72899371	HCT-116	colon:	n/a
27	chr9:72874251-72874301	HEK293	kidney:	embryo
28	chr9:72873728-72873778	HPAEpiC	pulmonary alveolar:	n/a
29	chr9:72873345-72873395	NB4	blood:	n/a
30	chr9:72871343-72871393	SAEC	small airway:	n/a
31	chr9:72877684-72877734	SK-N-SH_RA	brain:	n/a
32	chr9:72978571-72978621	AG09309	skin:	n/a
33	chr9:72873345-72873395	NHDF-neo	bronchial:	n/a
34	chr9:72871343-72871393	ECC-1	luminal epithelium:	n/a
35	chr9:72899321-72899371	T-47D	breast:	n/a
36	chr9:72873373-72873423	NHBE	bronchial:	n/a
37	chr9:72873728-72873778	MCF10A-Er-Src	breast:	n/a
38	chr9:72872391-72872441	CMK	blood:	n/a
39	chr9:72873728-72873778	ovcar-3	ovarian:	n/a
40	chr9:72873373-72873423	AG09309	skin:	n/a
41	chr9:72873544-72873594	H1-hESC	embryonic stem cell:	embryo
42	chr9:72873345-72873395	HL-60	blood:	n/a
43	chr9:72899321-72899371	SK-N-SH	brain:	n/a
44	chr9:72873728-72873778	SAEC	small airway:	n/a
45	chr9:72877684-72877734	Hela-S3	cervix:	n/a
46	chr9:72873345-72873395	NHBE	bronchial:	n/a
47	chr9:72873345-72873395	HNPCEpiC	eye:	n/a
48	chr9:72978571-72978621	Hela-S3	cervix:	n/a
49	chr9:72874528-72874578	ProgFib	skin:	n/a
50	chr9:72874251-72874301	T-47D	breast:	n/a

(count:130 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr9:73001433..73004900-chr9:73019421..73022368,3	K562	blood:
2	chr9:72873820..72877013-chr9:72882771..72886042,3	K562	blood:
3	chr9:72903671..72905306-chr9:72912810..72915435,2	MCF-7	breast:
4	chr9:72890363..72893798-chr9:72895489..72899233,4	K562	blood:
5	chr9:72874733..72877104-chr9:72888484..72890137,2	K562	blood:
6	chr9:72904493..72907412-chr9:72913859..72916976,3	K562	blood:
7	chr9:72373387..72376208-chr9:72873924..72875696,2	K562	blood:
8	chr17:56736040..56736768-chr9:72880035..72880982,2	MCF-7	breast:
9	chr9:72995584..72997971-chr9:73002948..73005254,2	K562	blood:
10	chr9:72988508..72991174-chr9:73029206..73032016,2	MCF-7	breast:
11	chr9:72960499..72963877-chr9:72974457..72977439,3	K562	blood:
12	chr9:72874893..72877687-chr9:72912931..72914790,2	K562	blood:
13	chr9:72897081..72899736-chr9:72903507..72905906,2	K562	blood:
14	chr9:72872951..72875030-chr9:72881789..72883393,2	MCF-7	breast:
15	chr9:72873487..72875340-chr9:72915258..72917864,2	MCF-7	breast:
16	chr9:72872699..72874574-chr9:72884365..72888295,3	MCF-7	breast:
17	chr9:72871762..72875309-chr9:72918153..72920049,3	K562	blood:
18	chr9:72884845..72889230-chr9:72890104..72893767,5	K562	blood:
19	chr9:72958849..72960599-chr9:72962750..72964507,2	MCF-7	breast:
20	chr9:72868706..72870705-chr9:73034414..73037199,2	K562	blood:
21	chr9:72872238..72875119-chr9:72928144..72929858,2	MCF-7	breast:
22	chr9:72974823..72977797-chr9:73034624..73036891,2	MCF-7	breast:
23	chr9:72995584..72997971-chr9:73002948..73005254,2	K562	blood:
24	chr9:72892928..72895718-chr9:72895750..72898961,3	K562	blood:
25	chr9:72970286..72973007-chr9:72974824..72976368,2	MCF-7	breast:
26	chr9:72968867..72970637-chr9:72974128..72976296,2	K562	blood:
27	chr9:72915207..72917805-chr9:72934554..72936144,2	K562	blood:
28	chr9:72978429..72981216-chr9:73204901..73207733,2	MCF-7	breast:
29	chr9:72961600..72964346-chr9:73026970..73028504,2	MCF-7	breast:
30	chr9:72958849..72960599-chr9:72962750..72964507,2	MCF-7	breast:
31	chr9:72904493..72907412-chr9:72913859..72916976,3	K562	blood:
32	chr9:72880580..72882799-chr9:72889406..72891309,2	K562	blood:
33	chr12:104531449..104532221-chr9:72873633..72874142,2	Hela-S3	cervix:
34	chr16:87426140..87426868-chr9:72873483..72874472,2	Hela-S3	cervix:
35	chr9:72880580..72882799-chr9:72889406..72891309,2	K562	blood:
36	chr9:72999364..73002925-chr9:73026593..73030513,4	K562	blood:
37	chr9:72955339..72956157-chr9:73216775..73218041,5	K562	blood:
38	chr9:72972401..72973961-chr9:72976176..72979020,2	K562	blood:
39	chr9:72967533..72968221-chr9:73217175..73217782,2	MCF-7	breast:
40	chr9:72955484..72956149-chr9:73217043..73217606,2	MCF-7	breast:
41	chr9:73002603..73004957-chr9:73009257..73013161,4	K562	blood:
42	chr3:57678149..57678816-chr9:72873480..72874476,2	Hela-S3	cervix:
43	chr9:72957661..72959834-chr9:72968408..72970281,2	MCF-7	breast:
44	chr9:72873237..72875839-chr9:72891924..72894038,2	MCF-7	breast:
45	chr9:72868452..72871714-chr9:72871997..72874564,6	MCF-7	breast:
46	chr9:72972461..72974915-chr9:72975072..72979073,3	K562	blood:
47	chr9:72996295..72998403-chr9:73003399..73005070,2	MCF-7	breast:
48	chr9:72905306..72907170-chr9:72915161..72918867,3	K562	blood:
49	chr9:72947673..72949257-chr9:72951564..72953120,2	K562	blood:
50	chr9:72873371..72875621-chr9:72900313..72901949,2	MCF-7	breast:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KLF9-3	chr9:72872831-72872851	NONHSAT131808
2	lnc-SMC5-4	chr9:72991891-72992282	NONHSAT131815
3	lnc-KLF9-3	chr9:72872027-72873730	NONHSAT131810
4	lnc-SMC5-5	chr9:72997924-72998368	NONHSAT131816
5	lnc-MAMDC2-1	chr9:72935053-72937759	NONHSAT131812
6	lnc-SMC5-3	chr9:72990511-72991244	NONHSAT131814
7	lnc-KLF9-3	chr9:72873312-72873790	NONHSAT131808

No data

(count:7 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	KLF9	hsa-miR-200c-3p	chr9:72999650-72999643
2	KLF9	hsa-miR-218-5p	chr9:73002517-73002537
3	KLF9	hsa-miR-93-5p	chr9:73001895-73001917
4	KLF9	hsa-miR-200c-3p	chr9:72999644-72999666
5	KLF9	hsa-miR-218-5p	chr9:73002523-73002517
6	KLF9	hsa-miR-21-5p	chr9:73001902-73001923
7	KLF9	hsa-miR-33a-5p	chr9:73000062-73000083

Variant related genes	Relation type
SMC5-AS1	TF binding region
SMC5	TF binding region
ENSG00000239180	TF binding region
SMC5-AS1	CpG island
SMC5	CpG island
ENSG00000239180	CpG island
ENSG00000176845	chromatin interactions
ENSG00000140941	chromatin interactions
ENSG00000174839	chromatin interactions
ENSG00000204620	chromatin interactions
ENSG00000268364	chromatin interactions
ENSG00000198887	chromatin interactions
ENSG00000121851	chromatin interactions
ENSG00000140332	chromatin interactions
ENSG00000188647	chromatin interactions
ENSG00000107249	chromatin interactions
ENSG00000142546	chromatin interactions
ENSG00000202077	chromatin interactions
ENSG00000119138	chromatin interactions
ENSG00000181039	chromatin interactions
ENSG00000199347	chromatin interactions
ENSG00000102317	chromatin interactions
ENSG00000120837	chromatin interactions
ENSG00000140525	chromatin interactions

Extended variants
information (count: 5973 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:5973 , 50 per page) page: 1 2 3 4 5 6 7 ... 120

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs542320854	chr9:72852719-72852720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs557977579	chr9:72852729-72852730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs557131024	chr9:72852758-72852759	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs577949169	chr9:72852778-72852779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs540708634	chr9:72852797-72852798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs575534432	chr9:72852819-72852820	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs150354367	chr9:72852851-72852852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs376811942	chr9:72852852-72852853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs188224648	chr9:72852861-72852862	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs564407826	chr9:72852908-72852909	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs373779978	chr9:72852940-72852941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs6560085	chr9:72852979-72852980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs184806845	chr9:72852984-72852985	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs2479032	chr9:72853098-72853099	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
15	rs561714351	chr9:72853134-72853135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs528841685	chr9:72853165-72853166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs550652189	chr9:72853168-72853169	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs200396705	chr9:72853257-72853258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs568581726	chr9:72853285-72853286	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs531023102	chr9:72853292-72853293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs10868773	chr9:72853332-72853333	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs570835894	chr9:72853356-72853357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs545724311	chr9:72853400-72853401	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs565122436	chr9:72853403-72853404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs188929613	chr9:72853485-72853486	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs199815644	chr9:72853504-72853505	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs200487426	chr9:72853535-72853536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs201152634	chr9:72853569-72853570	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs568447602	chr9:72853594-72853595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs138816618	chr9:72853625-72853626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs557446100	chr9:72853645-72853646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs575795056	chr9:72853670-72853671	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs544131891	chr9:72853674-72853675	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs141409059	chr9:72853715-72853716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs573216084	chr9:72853747-72853748	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs527904970	chr9:72853825-72853826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs181883869	chr9:72853830-72853831	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs150916631	chr9:72853836-72853837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs7046861	chr9:72853840-72853841	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs187010286	chr9:72853841-72853842	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs543825705	chr9:72853879-72853880	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs562275688	chr9:72853890-72853891	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs532840358	chr9:72853894-72853895	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs10114529	chr9:72853899-72853900	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs564352497	chr9:72853931-72853932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs199782167	chr9:72853946-72853947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs200606233	chr9:72853957-72853958	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs7046167	chr9:72854019-72854020	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs568627522	chr9:72854024-72854025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs535879793	chr9:72854051-72854052	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Melanoma	22183965	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	20729466	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Oral cancer	21386901	CNVD
Epilepsy	22083797	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Bipolar disorder	18458673	CNVD
Schizophrenia	23813976	CNVD
Breast cancer	22522925	CNVD
Intellectual disability	21811512	CNVD
Autism	21484199	CNVD
Breast cancer	22737080	CNVD
Malignant peripheral nerve sheath tumor	22811580	CNVD
Leprosy	22719964	CNVD
Primary ovarian insufficiency	22879975	CNVD
Malignant melanoma	17260012	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:4652 , 50 per page) page: 1 2 3 4 5 6 7 ... 94

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72828000-72858800	Weak transcription	Gastric	stomach
2	chr9:72833600-72856800	Weak transcription	Aorta	Aorta
3	chr9:72844400-72855400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:72845000-72858600	Weak transcription	Fetal Stomach	stomach
5	chr9:72845000-72859200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr9:72845000-72870400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:72846200-72854600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:72847400-72857600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr9:72847400-72870800	Weak transcription	Pancreas	Pancrea
10	chr9:72849600-72855400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:72854600-72856000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:72855400-72855800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:72855400-72855800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:72855400-72856000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:72855800-72870800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:72856000-72861800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:72856000-72867600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr9:72860600-72870800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr9:72861800-72862000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:72865200-72865800	Enhancers	Liver	Liver
21	chr9:72865800-72869200	Weak transcription	Liver	Liver
22	chr9:72867200-72868400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr9:72867400-72867600	Enhancers	Brain Angular Gyrus	brain
24	chr9:72867400-72868000	Enhancers	Brain Substantia Nigra	brain
25	chr9:72867400-72868200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr9:72867400-72868200	Enhancers	K562	blood
27	chr9:72867600-72868000	Enhancers	Brain Cingulate Gyrus	brain
28	chr9:72867600-72868000	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr9:72867600-72868400	Enhancers	Brain Hippocampus Middle	brain
30	chr9:72867600-72869000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:72867600-72870800	Weak transcription	Brain Angular Gyrus	brain
32	chr9:72867800-72870200	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr9:72868000-72870200	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr9:72868000-72870800	Weak transcription	Brain Substantia Nigra	brain
35	chr9:72868000-72871200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr9:72868000-72872600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr9:72868200-72868400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr9:72868200-72868400	Enhancers	Fetal Stomach	stomach
39	chr9:72868200-72869800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr9:72868200-72870400	Weak transcription	K562	blood
41	chr9:72868400-72868600	Enhancers	Small Intestine	intestine
42	chr9:72868400-72870600	Weak transcription	Brain Hippocampus Middle	brain
43	chr9:72868400-72870600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr9:72868400-72870800	Weak transcription	Fetal Stomach	stomach
45	chr9:72868400-72871000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr9:72868600-72870400	Weak transcription	Small Intestine	intestine
47	chr9:72868800-72869000	Enhancers	Stomach Mucosa	stomach
48	chr9:72869000-72869200	Enhancers	HepG2	liver
49	chr9:72869000-72869400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr9:72869000-72869800	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links