Variant report

Variant	rs7046167
Chromosome Location	chr9:72854019-72854020
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10491653	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1073540	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12683706	0.86[AMR][1000 genomes]
rs12683986	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12684301	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12684987	0.86[AMR][1000 genomes]
rs12685322	0.86[AMR][1000 genomes]
rs12685441	0.86[AMR][1000 genomes]
rs12685491	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12685534	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12686312	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12686573	0.86[AMR][1000 genomes]
rs12686584	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12686850	0.86[AMR][1000 genomes]
rs17051690	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17051696	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17052443	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17052748	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17053503	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17088796	0.86[AMR][1000 genomes]
rs17088840	0.86[AMR][1000 genomes]
rs17088889	0.86[AMR][1000 genomes]
rs17088905	0.86[AMR][1000 genomes]
rs1927116	0.86[AMR][1000 genomes]
rs1927117	0.86[AMR][1000 genomes]
rs1927119	0.86[AMR][1000 genomes]
rs1927142	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1927150	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2026138	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2148853	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2148865	0.86[AMR][1000 genomes]
rs2182732	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2296772	0.86[AMR][1000 genomes]
rs2296773	0.86[AMR][1000 genomes]
rs2871295	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3015223	0.86[AMR][1000 genomes]
rs34061327	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35188046	0.86[AMR][1000 genomes]
rs35508139	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3739773	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3739774	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4069793	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4287005	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4410968	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4439194	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4495496	0.86[AMR][1000 genomes]
rs4596711	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4602958	0.86[AMR][1000 genomes]
rs4606121	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4610818	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4621877	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56735283	0.86[AMR][1000 genomes]
rs56860643	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57048128	0.86[AMR][1000 genomes]
rs57398306	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57477024	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58219953	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58662316	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58948879	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58969772	0.81[AMR][1000 genomes]
rs58976318	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59010963	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59444215	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59546243	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59589460	0.86[AMR][1000 genomes]
rs59619263	0.86[AMR][1000 genomes]
rs59960592	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59976188	0.90[EUR][1000 genomes]
rs60049462	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60391643	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60458589	0.86[AMR][1000 genomes]
rs61092050	0.86[AMR][1000 genomes]
rs61265226	0.86[AMR][1000 genomes]
rs716535	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs753022	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs753023	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs954808	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv831615	chr9:72852705-73019692	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72828000-72858800	Weak transcription	Gastric	stomach
2	chr9:72833600-72856800	Weak transcription	Aorta	Aorta
3	chr9:72844400-72855400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:72845000-72858600	Weak transcription	Fetal Stomach	stomach
5	chr9:72845000-72859200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr9:72845000-72870400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:72846200-72854600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:72847400-72857600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr9:72847400-72870800	Weak transcription	Pancreas	Pancrea
10	chr9:72849600-72855400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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