Variant report

Variant	nsv832247
Chromosome Location	chr11:101123483-101298787
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:151)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:151 , 50 per page) page: 1 2 3 4

No.	Distal block	Cell Line	Cell type
1	chr11:100948856..100949840-chr11:101206730..101207879,3	MCF-7	breast:
2	chr11:101214119..101216758-chr11:101307502..101310492,2	MCF-7	breast:
3	chr11:101168163..101170220-chr11:101312254..101314141,3	MCF-7	breast:
4	chr11:101206473..101207424-chr11:101222333..101223259,4	MCF-7	breast:
5	chr11:101296877..101299041-chr11:101301262..101303756,2	MCF-7	breast:
6	chr11:101199399..101202108-chr11:101210102..101212481,2	MCF-7	breast:
7	chr11:101261268..101263471-chr11:101303237..101305024,2	MCF-7	breast:
8	chr11:101206779..101209574-chr11:101209606..101213423,7	MCF-7	breast:
9	chr11:101207771..101208275-chr11:101307206..101308039,2	MCF-7	breast:
10	chr11:101170121..101171100-chr11:101206775..101207627,3	MCF-7	breast:
11	chr11:101170121..101171100-chr11:101206775..101207627,3	MCF-7	breast:
12	chr11:101170034..101170593-chr11:101198365..101199332,2	MCF-7	breast:
13	chr11:101168061..101171064-chr11:101191672..101195408,4	MCF-7	breast:
14	chr11:101171515..101173321-chr11:101175270..101177157,2	MCF-7	breast:
15	chr11:100870113..100871129-chr11:101206662..101207932,9	MCF-7	breast:
16	chr11:101206647..101207551-chr11:101312233..101313047,5	MCF-7	breast:
17	chr11:101199399..101202108-chr11:101210102..101212481,2	MCF-7	breast:
18	chr11:101048952..101049967-chr11:101206917..101207587,3	MCF-7	breast:
19	chr11:101206469..101207289-chr11:101222618..101223186,3	MCF-7	breast:
20	chr11:100904442..100905396-chr11:101206625..101207402,5	MCF-7	breast:
21	chr11:101132696..101134898-chr11:101137456..101139610,2	K562	blood:
22	chr11:100997950..100999651-chr11:101197164..101199921,2	MCF-7	breast:
23	chr11:101207064..101211213-chr11:101212680..101214368,3	MCF-7	breast:
24	chr11:101206973..101209603-chr11:101215324..101218804,5	MCF-7	breast:
25	chr11:101170070..101170586-chr11:101198244..101199238,2	MCF-7	breast:
26	chr11:100948856..100949860-chr11:101206555..101207879,10	MCF-7	breast:
27	chr11:101197206..101199114-chr11:101209855..101211534,2	MCF-7	breast:
28	chr11:101049025..101049983-chr11:101206619..101207429,6	MCF-7	breast:
29	chr11:101194550..101198400-chr11:101200921..101204715,3	MCF-7	breast:
30	chr11:101047489..101050587-chr11:101203983..101207285,5	MCF-7	breast:
31	chr11:101194550..101198400-chr11:101200921..101204715,3	MCF-7	breast:
32	chr11:100851058..100853981-chr11:101168719..101170775,2	MCF-7	breast:
33	chr11:101170357..101171873-chr11:101307513..101310184,2	MCF-7	breast:
34	chr11:101216604..101219529-chr11:101221127..101223365,4	MCF-7	breast:
35	chr11:101170784..101172999-chr11:101193272..101195155,2	MCF-7	breast:
36	chr11:101273217..101274799-chr11:101277043..101279402,2	MCF-7	breast:
37	chr11:101191374..101193508-chr11:101195794..101197990,2	K562	blood:
38	chr11:101206446..101207671-chr11:101306899..101307918,17	MCF-7	breast:
39	chr11:101169688..101170959-chr11:101206618..101208220,14	MCF-7	breast:
40	chr11:101169560..101172148-chr11:101207903..101209528,2	MCF-7	breast:
41	chr11:101206779..101209574-chr11:101209606..101213423,7	MCF-7	breast:
42	chr11:100870474..100871073-chr11:101169597..101170505,2	MCF-7	breast:
43	chr11:100998975..101000571-chr11:101190001..101191686,2	MCF-7	breast:
44	chr11:100998805..101000878-chr11:101153883..101157713,3	MCF-7	breast:
45	chr11:101171515..101173321-chr11:101175270..101177157,2	MCF-7	breast:
46	chr11:100870075..100870912-chr11:101206818..101207630,4	MCF-7	breast:
47	chr11:100904624..100905561-chr11:101206740..101208111,4	MCF-7	breast:
48	chr11:100949085..100949664-chr11:101206913..101207439,2	MCF-7	breast:
49	chr11:101194579..101196547-chr11:101197185..101199091,3	MCF-7	breast:
50	chr11:100989468..100991429-chr11:101214190..101216529,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM133-6	chr11:101253503-101253731	NONHSAT023856
2	lnc-TMEM133-6	chr11:101217592-101217750	NONHSAT023856

No data

Variant related genes	Relation type
ENSG00000082175	chromatin interactions

Extended variants
information (count: 5383 )
Associated
traits (count: 86 )

Variant overlapped rSNPs/rCNVs (count:5383 , 50 per page) page: 1 2 3 4 5 6 7 ... 108

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs527823836	chr11:101123489-101123490	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs34114480	chr11:101123533-101123534	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs373646323	chr11:101123543-101123544	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs79082696	chr11:101123584-101123585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs538893335	chr11:101123592-101123593	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs187130347	chr11:101123628-101123629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs554708015	chr11:101123660-101123661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs569162646	chr11:101123664-101123665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs111598668	chr11:101123679-101123680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs145058002	chr11:101123697-101123698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs573465845	chr11:101123707-101123708	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs574445306	chr11:101123727-101123728	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs543515942	chr11:101123742-101123743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs73583818	chr11:101123743-101123744	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs527709322	chr11:101123786-101123787	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs371329830	chr11:101123822-101123823	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs66533453	chr11:101123851-101123852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs560169461	chr11:101123853-101123854	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs191139272	chr11:101123865-101123866	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs182556233	chr11:101123881-101123882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs546497305	chr11:101123942-101123943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs187318252	chr11:101123959-101123960	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs535304347	chr11:101123981-101123982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs138611027	chr11:101123982-101123983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs58128467	chr11:101123988-101123989	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs527737242	chr11:101124051-101124052	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs57127698	chr11:101124053-101124054	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs564447061	chr11:101124106-101124107	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs533344159	chr11:101124110-101124111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs35564752	chr11:101124115-101124116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs550185125	chr11:101124116-101124117	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs59060853	chr11:101124118-101124119	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs140366149	chr11:101124120-101124121	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs143697784	chr11:101124132-101124133	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs373931482	chr11:101124183-101124184	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs61892350	chr11:101124187-101124188	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs182498708	chr11:101124219-101124220	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs187583388	chr11:101124235-101124236	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs58405663	chr11:101124243-101124244	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs370241055	chr11:101124267-101124268	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs192877475	chr11:101124283-101124284	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs576557111	chr11:101124286-101124287	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs539030009	chr11:101124294-101124295	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs548614506	chr11:101124333-101124334	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs556164982	chr11:101124336-101124337	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs576657527	chr11:101124362-101124363	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs185809557	chr11:101124373-101124374	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs562099732	chr11:101124470-101124471	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs572692075	chr11:101124484-101124485	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs948891	chr11:101124540-101124541	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:86)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Melanoma	22183965	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Mantle cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal cancer	21851588	CNVD
Multiple myeloma	17550852	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Prostate cancer	18632612	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Melanoma	20877625	CNVD

Chromatin state (count:129 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101116600-101125800	Weak transcription	Ovary	ovary
2	chr11:101124200-101124800	Enhancers	Liver	Liver
3	chr11:101124800-101125400	Active TSS	Liver	Liver
4	chr11:101125800-101126400	Enhancers	Ovary	ovary
5	chr11:101126000-101126200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:101126200-101130400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:101126400-101169400	Weak transcription	Ovary	ovary
8	chr11:101134800-101135600	Enhancers	Colon Smooth Muscle	Colon
9	chr11:101135200-101135400	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr11:101135200-101135800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:101138000-101139200	Enhancers	Liver	Liver
12	chr11:101138400-101138600	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr11:101138600-101140600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr11:101139200-101140400	Weak transcription	Liver	Liver
15	chr11:101140400-101141800	Enhancers	Liver	Liver
16	chr11:101140600-101141000	Enhancers	Aorta	Aorta
17	chr11:101140600-101141600	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr11:101141000-101157400	Weak transcription	Aorta	Aorta
19	chr11:101143000-101143600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:101143600-101143800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:101147800-101148200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:101155400-101155600	Enhancers	Gastric	stomach
23	chr11:101155600-101158400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr11:101157400-101157800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:101167000-101168200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr11:101167800-101168200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:101167800-101168200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:101168000-101168400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:101169400-101170400	Enhancers	Ovary	ovary
30	chr11:101170400-101177600	Weak transcription	Ovary	ovary
31	chr11:101177000-101177200	Enhancers	Pancreatic Islets	Pancreatic Islet
32	chr11:101177200-101177600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr11:101177600-101177800	Enhancers	Ovary	ovary
34	chr11:101177600-101178800	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr11:101177800-101178800	Weak transcription	Ovary	ovary
36	chr11:101178800-101179000	Enhancers	Ovary	ovary
37	chr11:101178800-101179600	Enhancers	Aorta	Aorta
38	chr11:101188400-101188600	Enhancers	Ovary	ovary
39	chr11:101191200-101192400	Enhancers	Placenta	Placenta
40	chr11:101191800-101192200	Enhancers	Placenta Amnion	Placenta Amnion
41	chr11:101192000-101192400	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr11:101195600-101196800	Enhancers	Aorta	Aorta
43	chr11:101205000-101205600	Enhancers	Aorta	Aorta
44	chr11:101205000-101206200	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr11:101206200-101206400	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr11:101206200-101211600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr11:101206400-101207400	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr11:101206800-101208200	Enhancers	Pancreatic Islets	Pancreatic Islet
49	chr11:101207000-101208200	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr11:101207000-101208200	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links