Variant report

Variant	nsv833873
Chromosome Location	chr19:52788939-52937281
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1769)
CpG islands
(count:4523)
Chromatin interactive
region (count:93)
LncRNA
region (count:54)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1769 , 50 per page) page: 1 2 3 4 5 6 7 ... 36

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:52900846-52901131	HepG2	liver:	n/a	n/a
2	ARID3A	chr19:52826601-52826666	HepG2	liver:	n/a	n/a
3	ARID3A	chr19:52800057-52800292	HepG2	liver:	n/a	n/a
4	ATF1	chr19:52852027-52852098	K562	blood:	n/a	n/a
5	ATF1	chr19:52851245-52851421	K562	blood:	n/a	n/a
6	BACH1	chr19:52873031-52873715	H1-hESC	embryonic stem cell:	n/a	n/a
7	BACH1	chr19:52800724-52800735	K562	blood:	n/a	n/a
8	BACH1	chr19:52800399-52800809	H1-hESC	embryonic stem cell:	n/a	n/a
9	BACH1	chr19:52839357-52840089	H1-hESC	embryonic stem cell:	n/a	n/a
10	BCL3	chr19:52800355-52800805	A549	lung:	n/a	chr19:52800653-52800666 chr19:52800410-52800423 chr19:52800406-52800415
11	BCLAF1	chr19:52900832-52901375	GM12878	blood:	n/a	n/a
12	BHLHE40	chr19:52800028-52800858	GM12878	blood:	n/a	n/a
13	BHLHE40	chr19:52800103-52800749	HepG2	liver:	n/a	n/a
14	BHLHE40	chr19:52900942-52901324	GM12878	blood:	n/a	n/a
15	BHLHE40	chr19:52846961-52846970	GM12878	blood:	n/a	n/a
16	BHLHE40	chr19:52800388-52801111	K562	blood:	n/a	n/a
17	BHLHE40	chr19:52872998-52873673	GM12878	blood:	n/a	chr19:52873453-52873469
18	BRCA1	chr19:52800571-52800744	HepG2	liver:	n/a	n/a
19	CBX3	chr19:52800594-52801006	K562	blood:	n/a	n/a
20	CBX3	chr19:52826471-52826959	K562	blood:	n/a	n/a
21	CBX3	chr19:52810510-52810916	HCT-116	colon:	n/a	n/a
22	CBX3	chr19:52810515-52810938	K562	blood:	n/a	n/a
23	CBX3	chr19:52827033-52827512	K562	blood:	n/a	n/a
24	CBX3	chr19:52846823-52847179	K562	blood:	n/a	n/a
25	CBX3	chr19:52900872-52901266	K562	blood:	n/a	n/a
26	CBX3	chr19:52810427-52810886	K562	blood:	n/a	n/a
27	CBX3	chr19:52825626-52826201	K562	blood:	n/a	n/a
28	CBX3	chr19:52900945-52901284	K562	blood:	n/a	n/a
29	CCNT2	chr19:52831277-52831477	K562	blood:	n/a	n/a
30	CCNT2	chr19:52800052-52800895	K562	blood:	n/a	n/a
31	CEBPB	chr19:52841319-52841464	A549	lung:	n/a	n/a
32	CEBPB	chr19:52900506-52900786	HepG2	liver:	n/a	chr19:52900622-52900635 chr19:52900622-52900633
33	CEBPB	chr19:52792810-52792972	IMR90	lung:	n/a	chr19:52792846-52792859 chr19:52792846-52792857
34	CEBPB	chr19:52900001-52900200	HepG2	liver:	n/a	chr19:52900142-52900153
35	CEBPB	chr19:52792757-52792944	A549	lung:	n/a	chr19:52792846-52792859 chr19:52792846-52792857
36	CEBPB	chr19:52797955-52798175	A549	lung:	n/a	chr19:52798084-52798093 chr19:52798084-52798095 chr19:52798084-52798093 chr19:52798084-52798093 chr19:52798082-52798095 chr19:52798082-52798093 chr19:52798082-52798095 chr19:52798084-52798093
37	CEBPB	chr19:52792756-52793015	HepG2	liver:	n/a	chr19:52792846-52792859 chr19:52792846-52792857
38	CEBPB	chr19:52823946-52824100	A549	lung:	n/a	n/a
39	CEBPB	chr19:52900477-52900699	H1-hESC	embryonic stem cell:	n/a	chr19:52900622-52900635 chr19:52900622-52900633
40	CEBPB	chr19:52854850-52855103	H1-hESC	embryonic stem cell:	n/a	n/a
41	CEBPB	chr19:52840123-52840557	IMR90	lung:	n/a	n/a
42	CEBPB	chr19:52840199-52840417	H1-hESC	embryonic stem cell:	n/a	n/a
43	CEBPB	chr19:52797915-52798211	HepG2	liver:	n/a	chr19:52798084-52798093 chr19:52798084-52798095 chr19:52798084-52798093 chr19:52798084-52798093 chr19:52798082-52798095 chr19:52798082-52798093 chr19:52798082-52798095 chr19:52798084-52798093
44	CEBPD	chr19:52800335-52800632	HepG2	liver:	n/a	n/a
45	CEBPD	chr19:52800352-52801134	K562	blood:	n/a	n/a
46	CEBPD	chr19:52831329-52831541	K562	blood:	n/a	n/a
47	CHD1	chr19:52900901-52901048	H1-hESC	embryonic stem cell:	n/a	n/a
48	CHD1	chr19:52873085-52873535	GM12878	blood:	n/a	n/a
49	CHD1	chr19:52901004-52901064	GM12878	blood:	n/a	n/a
50	CHD1	chr19:52800475-52800811	GM12878	blood:	n/a	n/a

(count:4523 , 50 per page) page: 1 2 3 4 5 6 7 ... 91

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:52862167-52862217	PANC-1	pancreas:	n/a
2	chr19:52933695-52933745	NHDF-neo	bronchial:	n/a
3	chr19:52934393-52934443	PFSK-1	brain:	n/a
4	chr19:52873173-52873223	SK-N-SH_RA	brain:	n/a
5	chr19:52934466-52934516	Hela-S3	cervix:	n/a
6	chr19:52921300-52921350	ECC-1	luminal epithelium:	n/a
7	chr19:52921300-52921350	IMR90	lung:	fetal
8	chr19:52838671-52838721	SKMC	muscle:	n/a
9	chr19:52900469-52900519	HRE	kidney:	n/a
10	chr19:52862167-52862217	PANC-1	pancreas:	n/a
11	chr19:52933695-52933745	NHDF-neo	bronchial:	n/a
12	chr19:52934393-52934443	PFSK-1	brain:	n/a
13	chr19:52873173-52873223	SK-N-SH_RA	brain:	n/a
14	chr19:52934466-52934516	Hela-S3	cervix:	n/a
15	chr19:52921300-52921350	ECC-1	luminal epithelium:	n/a
16	chr19:52921300-52921350	IMR90	lung:	fetal
17	chr19:52838671-52838721	SKMC	muscle:	n/a
18	chr19:52900469-52900519	HRE	kidney:	n/a
19	chr19:52900980-52901030	NHDF-neo	bronchial:	n/a
20	chr19:52838984-52839034	HNPCEpiC	eye:	n/a
21	chr19:52873125-52873175	GM12878	blood:	n/a
22	chr19:52801051-52801101	MCF10A-Er-Src	breast:	n/a
23	chr19:52839738-52839788	MCF10A-Er-Src	breast:	n/a
24	chr19:52840042-52840092	PANC-1	pancreas:	n/a
25	chr19:52905427-52905477	BJ	skin:	n/a
26	chr19:52838671-52838721	AoSMC	blood vessel:	n/a
27	chr19:52900914-52900964	AG09309	skin:	n/a
28	chr19:52904218-52904268	HRE	kidney:	n/a
29	chr19:52847943-52847993	CMK	blood:	n/a
30	chr19:52901639-52901689	GM12878	blood:	n/a
31	chr19:52900988-52901038	HUVEC	blood vessel:	n/a
32	chr19:52900914-52900964	AG04449	skin:	fetal
33	chr19:52873426-52873476	MCF-7	breast:	n/a
34	chr19:52800391-52800441	PrEC	prostate:	n/a
35	chr19:52900901-52900951	NH-A	brain:	n/a
36	chr19:52848616-52848666	HCT-116	colon:	n/a
37	chr19:52800241-52800291	CMK	blood:	n/a
38	chr19:52900988-52901038	HMEC	breast:	n/a
39	chr19:52900970-52901020	AG04450	lung:	fetal
40	chr19:52900970-52901020	HEK293	kidney:	embryo
41	chr19:52839738-52839788	SAEC	small airway:	n/a
42	chr19:52796719-52796769	NHBE	bronchial:	n/a
43	chr19:52800757-52800807	Hela-S3	cervix:	n/a
44	chr19:52800524-52800574	GM06990	blood:	n/a
45	chr19:52839047-52839097	NB4	blood:	n/a
46	chr19:52800241-52800291	GM12891	blood:	n/a
47	chr19:52888958-52889008	PANC-1	pancreas:	n/a
48	chr19:52800385-52800435	GM06990	blood:	n/a
49	chr19:52873085-52873135	GM06990	blood:	n/a
50	chr19:52839405-52839455	AG09309	skin:	n/a

(count:93 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr19:52793468..52795299-chr19:52799350..52801960,2	MCF-7	breast:
2	chr19:52730627..52732883-chr19:52789456..52792184,2	K562	blood:
3	chr19:52881938..52883510-chr19:52886057..52888201,2	K562	blood:
4	chr19:52771349..52773088-chr19:52900874..52902470,2	MCF-7	breast:
5	chr19:52805604..52808306-chr19:52809399..52811799,3	K562	blood:
6	chr19:52903104..52905523-chr19:52907320..52908934,2	K562	blood:
7	chr19:52838795..52841074-chr19:52850925..52853608,3	MCF-7	breast:
8	chr19:52835793..52838110-chr19:52840085..52841943,2	K562	blood:
9	chr19:52881938..52883510-chr19:52886057..52888201,2	K562	blood:
10	chr19:52772363..52775107-chr19:52799601..52802037,4	MCF-7	breast:
11	chr19:52828291..52831274-chr19:52840252..52843029,2	K562	blood:
12	chr19:52841087..52844060-chr19:52845758..52847842,2	MCF-7	breast:
13	chr19:52839220..52840960-chr19:52842927..52847321,5	MCF-7	breast:
14	chr19:52800603..52802220-chr19:52805113..52807077,2	K562	blood:
15	chr19:52799239..52802011-chr19:52817590..52819233,2	MCF-7	breast:
16	chr19:52796840..52799102-chr19:52799281..52802862,3	MCF-7	breast:
17	chr19:52776723..52778376-chr19:52800239..52801922,2	K562	blood:
18	chr19:52875265..52876916-chr19:52889763..52892567,2	MCF-7	breast:
19	chr19:52800534..52802484-chr19:52807746..52810070,2	MCF-7	breast:
20	chr19:52918097..52920312-chr19:52920533..52923080,2	MCF-7	breast:
21	chr19:52847805..52849404-chr19:52851147..52853001,2	MCF-7	breast:
22	chr19:52771880..52774244-chr19:52838831..52841718,3	MCF-7	breast:
23	chr19:52799531..52802059-chr19:52803187..52805101,2	K562	blood:
24	chr19:52786877..52789123-chr19:52793597..52795383,2	K562	blood:
25	chr19:52875265..52876916-chr19:52889763..52892567,2	MCF-7	breast:
26	chr19:52773000..52774618-chr19:52792454..52794386,2	K562	blood:
27	chr19:52839457..52840970-chr19:52859823..52861892,2	MCF-7	breast:
28	chr19:52641710..52644473-chr19:52838292..52841252,2	MCF-7	breast:
29	chr19:52901728..52903647-chr19:52912630..52914410,2	MCF-7	breast:
30	chr19:52771196..52774040-chr19:52836837..52839956,3	MCF-7	breast:
31	chr19:52835793..52838110-chr19:52840085..52841943,2	K562	blood:
32	chr19:52778691..52781131-chr19:52791731..52793541,2	MCF-7	breast:
33	chr19:52861080..52862902-chr19:52863243..52865852,2	K562	blood:
34	chr19:52804339..52806000-chr19:52838454..52840879,2	MCF-7	breast:
35	chr19:52780362..52782762-chr19:52795310..52797361,2	K562	blood:
36	chr19:52908988..52911904-chr19:52916328..52918022,2	K562	blood:
37	chr19:52829210..52832192-chr19:52833686..52836622,2	K562	blood:
38	chr19:52823009..52826195-chr19:52826633..52829397,3	K562	blood:
39	chr19:52861080..52862902-chr19:52863243..52865852,2	K562	blood:
40	chr19:52804812..52807578-chr19:52808701..52812079,3	MCF-7	breast:
41	chr19:52820318..52821847-chr19:52825066..52827938,2	K562	blood:
42	chr19:52772712..52774263-chr19:52799047..52800693,2	K562	blood:
43	chr19:52810214..52812761-chr19:52813239..52815974,2	K562	blood:
44	chr19:52829044..52832005-chr19:52837936..52840365,2	MCF-7	breast:
45	chr19:52839189..52842101-chr19:52900021..52902093,2	MCF-7	breast:
46	chr19:52799793..52802447-chr19:52803288..52807131,4	MCF-7	breast:
47	chr19:52792080..52795278-chr19:52800524..52804050,3	MCF-7	breast:
48	chr19:52771362..52774263-chr19:52797982..52800693,2	K562	blood:
49	chr19:52804812..52807578-chr19:52808701..52812079,3	MCF-7	breast:
50	chr19:52823009..52826195-chr19:52826633..52829397,3	K562	blood:

(count:54 , 50 per page) page: 1 2

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF880-1	chr19:52904938-52905006	NONHSAT067550
2	lnc-ZNF83-1	chr19:52899863-52900005	ENSG00000269834.1
3	lnc-ZNF83-1	chr19:52897580-52899003	NONHSAT067544
4	lnc-ZNF480-2	chr19:52839557-52839759	NONHSAT067536
5	lnc-ZNF83-1	chr19:52892272-52892556	ENSG00000269834.1
6	lnc-ZNF836-3	chr19:52801024-52801173	ENSG00000269102.1
7	lnc-ZNF83-1	chr19:52900715-52900985	ENSG00000246015
8	lnc-ZNF534-2	chr19:52918192-52918292	NONHSAT067551
9	lnc-ZNF83-1	chr19:52897584-52899003	ENSG00000246015
10	lnc-ZNF83-8	chr19:52929116-52929455	NONHSAT067553
11	lnc-ZNF83-1	chr19:52892095-52892698	NONHSAT067540
12	lnc-ZNF83-1	chr19:52900715-52901019	ENSG00000269834.1
13	lnc-ZNF83-1	chr19:52899618-52899752	ENSG00000246015
14	lnc-ZNF480-2	chr19:52850960-52851465	NONHSAT067537
15	lnc-ZNF83-1	chr19:52899569-52899752	NONHSAT067545
16	lnc-ZNF880-1	chr19:52905200-52905270	NONHSAT067550
17	lnc-ZNF83-1	chr19:52899618-52899752	ENSG00000269834.1
18	lnc-ZNF83-1	chr19:52900715-52901010	ENSG00000269834.1
19	lnc-ZNF83-1	chr19:52897580-52899003	NONHSAT067545
20	lnc-ZNF480-2	chr19:52839615-52839759	NONHSAT067537
21	lnc-ZNF83-1	chr19:52898780-52899003	ENSG00000269834.1
22	lnc-ZNF83-1	chr19:52897580-52899003	NONHSAT067546
23	lnc-ZNF83-1	chr19:52892095-52894826	ENSG00000269834.1
24	lnc-ZNF534-2	chr19:52918377-52918606	NONHSAT067551
25	lnc-ZNF83-1	chr19:52899863-52900005	ENSG00000269834.1
26	lnc-ZNF480-2	chr19:52850960-52851302	NONHSAT067536
27	lnc-ZNF836-4	chr19:52803946-52805128	ENSG00000269535.1
28	lnc-ZNF83-1	chr19:52892095-52896456	ENSG00000246015
29	lnc-ZNF83-1	chr19:52900448-52900520	ENSG00000269834.1
30	lnc-ZNF83-1	chr19:52899863-52900005	NONHSAT067545
31	lnc-ZNF83-1	chr19:52899569-52899752	ENSG00000269834.1
32	lnc-ZNF836-4	chr19:52810645-52810797	ENSG00000269535.1
33	lnc-ZNF83-1	chr19:52899569-52899752	ENSG00000246015
34	lnc-ZNF83-1	chr19:52899618-52899752	NONHSAT067544
35	lnc-ZNF83-1	chr19:52898044-52898100	ENSG00000269834.1
36	lnc-ZNF83-1	chr19:52899892-52900520	ENSG00000269834.1
37	lnc-ZNF836-4	chr19:52805234-52805383	ENSG00000269535.1
38	lnc-ZNF83-1	chr19:52898972-52899003	ENSG00000246015
39	lnc-ZNF83-1	chr19:52900715-52901010	NONHSAT067545
40	lnc-ZNF534-2	chr19:52914625-52917621	NONHSAT067551
41	lnc-ZNF880-1	chr19:52901153-52901273	NONHSAT067550
42	lnc-ZNF83-1	chr19:52900715-52901010	ENSG00000246015
43	lnc-ZNF836-4	chr19:52811920-52812006	ENSG00000269535.1
44	lnc-ZNF836-4	chr19:52829077-52829148	ENSG00000269535.1
45	lnc-ZNF83-1	chr19:52900715-52901010	NONHSAT067544
46	lnc-ZNF83-1	chr19:52899863-52900005	ENSG00000246015
47	lnc-ZNF83-1	chr19:52900715-52901010	NONHSAT067546
48	lnc-ZNF836-4	chr19:52848284-52848482	ENSG00000269535.1
49	lnc-ZNF83-1	chr19:52898851-52899003	ENSG00000269834.1
50	lnc-ZNF480-2	chr19:52850346-52850508	NONHSAT067537

No data

Variant related genes	Relation type
ZNF880	TF binding region
ZNF528	TF binding region
ZNF480	TF binding region
ENSG00000269834	TF binding region
ZNF610	TF binding region
ZNF534	TF binding region
DPPA5P1	TF binding region
ENSG00000269535	TF binding region
ENSG00000269102	TF binding region
ZNF880	CpG island
ZNF528	CpG island
ZNF480	CpG island
ENSG00000269834	CpG island
ZNF610	CpG island
ZNF534	CpG island
DPPA5P1	CpG island
ENSG00000269535	CpG island
ENSG00000269102	CpG island
ENSG00000167555	chromatin interactions
ENSG00000167554	chromatin interactions
ENSG00000204611	chromatin interactions
ENSG00000269834	chromatin interactions
ENSG00000198464	chromatin interactions
ENSG00000269102	chromatin interactions
ENSG00000188092	chromatin interactions
ENSG00000269535	chromatin interactions
ENSG00000208002	chromatin interactions
ENSG00000196214	chromatin interactions
CDC23	miRNA target sites
TPT1	miRNA target sites
NASP	miRNA target sites
BMP1	miRNA target sites
DLL1	miRNA target sites
KIAA0196	miRNA target sites
ULBP2	miRNA target sites

Extended variants
information (count: 6662 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:6662 , 50 per page) page: 1 2 3 4 5 6 7 ... 134

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs375337200	chr19:52788954-52788955	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs192758002	chr19:52788958-52788959	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs367671546	chr19:52789100-52789101	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs566237385	chr19:52789125-52789126	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs539673803	chr19:52789146-52789147	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs76980680	chr19:52789158-52789159	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs570406255	chr19:52789227-52789228	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs146636532	chr19:52789229-52789230	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs75120229	chr19:52789233-52789234	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs375759269	chr19:52789262-52789263	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs571219725	chr19:52789269-52789270	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs141384196	chr19:52789276-52789277	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs537441769	chr19:52789299-52789300	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs113368104	chr19:52789339-52789340	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs201956571	chr19:52789347-52789348	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs73577187	chr19:52789351-52789352	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs74344285	chr19:52789381-52789382	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs536009014	chr19:52789384-52789385	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs536060718	chr19:52789407-52789408	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs537110900	chr19:52789408-52789409	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs554520382	chr19:52789409-52789410	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs372740667	chr19:52789412-52789413	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs386810450	chr19:52789440-52789441	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs78367338	chr19:52789441-52789442	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs398038151	chr19:52789447-52789448	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs2560902	chr19:52789448-52789449	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs2560901	chr19:52789450-52789451	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs577932122	chr19:52789481-52789482	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs545090835	chr19:52789484-52789485	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs375609739	chr19:52789488-52789489	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs184461990	chr19:52789536-52789537	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs202168976	chr19:52789575-52789576	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs201663397	chr19:52789590-52789591	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs34438334	chr19:52789594-52789595	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs78507378	chr19:52789598-52789599	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs8100167	chr19:52789608-52789609	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs561458917	chr19:52789652-52789653	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs550351842	chr19:52789708-52789709	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs8100650	chr19:52789718-52789719	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs118157990	chr19:52789726-52789727	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs532098003	chr19:52789776-52789777	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs8100504	chr19:52789795-52789796	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs112892168	chr19:52789810-52789811	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs568539214	chr19:52789827-52789828	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs55733845	chr19:52789830-52789831	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs397934637	chr19:52789831-52789832	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs76964357	chr19:52789832-52789833	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs80321650	chr19:52789833-52789834	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs8103205	chr19:52789850-52789851	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs548117783	chr19:52789888-52789889	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Adrenocortical carcinoma	18281524	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Cancer	20164920	CNVD
Melanoma	17363583	CNVD
Breast cancer	21785460	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Lung adenocarcinoma	21935476	CNVD

Chromatin state (count:4993 , 50 per page) page: 1 2 3 4 5 6 7 ... 100

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52774200-52797400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:52774200-52799600	Weak transcription	Hela-S3	cervix
3	chr19:52774600-52795800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr19:52777200-52794000	Weak transcription	Psoas Muscle	Psoas
5	chr19:52780400-52800000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr19:52781600-52793600	Weak transcription	Fetal Heart	heart
7	chr19:52783200-52794800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
8	chr19:52783200-52795200	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr19:52783400-52795800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
10	chr19:52784400-52794800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr19:52784600-52791600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
12	chr19:52784600-52792000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
13	chr19:52784600-52794000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr19:52784600-52794600	ZNF genes & repeats	Primary T cells from cord blood	blood
15	chr19:52784600-52795000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
16	chr19:52784600-52795800	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr19:52784600-52796000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr19:52784600-52796400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr19:52784600-52796800	ZNF genes & repeats	Liver	Liver
20	chr19:52784800-52789800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr19:52784800-52790000	Strong transcription	Fetal Brain Female	brain
22	chr19:52784800-52790200	ZNF genes & repeats	GM12878-XiMat	blood
23	chr19:52784800-52790800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr19:52784800-52793400	Strong transcription	Duodenum Smooth Muscle	Duodenum
25	chr19:52784800-52794800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
26	chr19:52784800-52795800	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr19:52784800-52795800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr19:52784800-52795800	Strong transcription	Dnd41	blood
29	chr19:52785000-52793600	Strong transcription	Primary B cells from peripheral blood	blood
30	chr19:52785000-52795400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
31	chr19:52785000-52795800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr19:52785000-52796000	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr19:52785200-52789800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
34	chr19:52785200-52792000	Strong transcription	Fetal Lung	lung
35	chr19:52785200-52794600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr19:52785200-52794800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr19:52785200-52795400	Strong transcription	Fetal Muscle Trunk	muscle
38	chr19:52785200-52796000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr19:52785200-52796400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr19:52785400-52789200	Strong transcription	Gastric	stomach
41	chr19:52785400-52789400	Strong transcription	Aorta	Aorta
42	chr19:52785400-52790200	Strong transcription	Fetal Stomach	stomach
43	chr19:52785400-52794200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr19:52785400-52794400	ZNF genes & repeats	Lung	lung
45	chr19:52785400-52795400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr19:52785400-52796000	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr19:52785400-52796000	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr19:52785400-52796400	Strong transcription	Adipose Nuclei	Adipose
49	chr19:52785400-52797400	Strong transcription	Brain Germinal Matrix	brain
50	chr19:52785600-52789000	Strong transcription	Primary T killer memory cells from peripheral blood	blood

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